Chapel reverse-complement (updates) Brad Chamberlain

CONTRIBUTE SOURCE CODE

Chapel revcomp (updates to #​2 and #​3) Brad Chamberlain

We've been cleaning up our IO features for a forthcoming Chapel 2.0 release and deprecated the support for an old way of providing IO hints in September's Chapel 1.28 release, then removed them in this month's 1.29 release. The following two codes are intended as drop-in replacements for Chapel #​2 and Chapel #​3 respectively, where the only change is to switch over to the new syntax.

Attach your source code file

• revcomp2.chpl
• revcomp3.chpl

Provide an example build command-line

$ chpl revcomp2.chpl
$ ./revcomp2 --n=0 < fasta-revcomp.small   # --n=0 is optional, provided for consistency with other Chapel benchmarks 
$ chpl revcomp3.chpl
$ ./revcomp3 --n=0 < fasta-revcomp.small   # --n=0 is optional, provided for consistency with other Chapel benchmarks