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Commits on Source (2)
Drop '\' which is not part of RFC822 definition
· b6a22464
Andreas Tille
authored
Mar 26, 2018
b6a22464
Add format definition
· ec82b072
Andreas Tille
authored
Mar 26, 2018
ec82b072
Show whitespace changes
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tasks/bio
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Biology
Install: true
Description: Debian Med bioinformatics packages
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tasks/bio-dev
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Biology Development
Install: true
Description: Debian Med packages for development of bioinformatics applications
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tasks/bio-ngs
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Next Generation Sequencing
Metapackage: false
Description: Debian Med bioinformatics applications usable in Next Generation Sequencing
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tasks/bio-phylogeny
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Phylogeny
Metapackage: false
Description: Debian Med phylogeny packages
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tasks/cloud
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Cloud
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
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@@ -6,77 +7,65 @@ Description: Debian Med bioinformatics applications usable in cloud computing
in cloud computing clusters, where space can be limited.
X-Begin-Category: Phylogenetic analysis
Recommends: \
altree, clearcut, fastdnaml, fasttree, parsinsert, phyml, phyutility,
prime-phylo, mrbayes, tree-puzzle | tree-ppuzzle
Recommends: altree, clearcut, fastdnaml, fasttree, parsinsert, phyml,
phyutility, prime-phylo, mrbayes, tree-puzzle | tree-ppuzzle
X-End-Category: Phylogenetic analysis
X-Begin-Category: Genetics and genomics
Recommends: \
alien-hunter, bagpipe, fastlink, loki, gasic, genometools, plink,
Recommends: alien-hunter, bagpipe, fastlink, loki, gasic, genometools, plink,
probabel, r-cran-qtl, r-other-mott-happy.hbrem
X-End-Category: Genetics
X-Begin-Category: Sequence alignments and related programs.
Recommends: \
amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta, cd-hit,
clustalo, clustalw, conservation-code, dialign, dialign-tx,
Recommends: amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta,
cd-hit, clustalo, clustalw, conservation-code, dialign, dialign-tx,
emboss, embassy-domalign, embassy-domainatrix, embassy-domsearch,
embassy-phylip, exonerate, gff2aplot, gff2ps, glam2, gmap, hmmer,
jellyfish, kalign, mafft, mlv-smile, mummer, muscle, neobio, poa,
prank,
probcons, proda, pynast, sibsim4, sigma-align, sim4, snap,
jellyfish, kalign, mafft, mlv-smile, mummer, muscle, neobio, poa,
prank,
probcons, proda, pynast, sibsim4, sigma-align, sim4, snap,
squizz, t-coffee, wise, zalign
X-End-Category: Sequence alignments and related programs.
X-Begin-Category: High throughput sequencing
Recommends: \
bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools,
Recommends: bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools,
tabix, vcftools
Comment: Processing
Recommends: \
anfo, cufflinks, bowtie, bowtie2, bwa, last-align, maq, perm, tophat, smalt,
soapdenovo, soapdenovo2
Recommends: anfo, cufflinks, bowtie, bowtie2, bwa, last-align, maq, perm,
tophat, smalt, soapdenovo, soapdenovo2
Comment: Aligners
Recommends: \
abyss, mapsembler2, idba, minia, mira-assembler, ssake, velvet
Recommends: abyss, mapsembler2, idba, minia, mira-assembler, ssake, velvet
Comment: Assembly
Recommends: \
ampliconnoise, arden, fastqc
Recommends: ampliconnoise, arden, fastqc
Comment: Filtering and QC
Recommends: \
discosnp, dnaclust, fitgcp, giira, grinder, kissplice, macs, mothur,
paraclu, r-bioc-hilbertvis, sra-toolkit
Recommends: discosnp, dnaclust, fitgcp, giira, grinder, kissplice, macs,
mothur, paraclu, r-bioc-hilbertvis, sra-toolkit
Comment: Other
X-End-Category: High throughput sequencing
X-Begin-Category: Analysis of RNA sequences.
Recommends: \
aragorn, infernal, rnahybrid, rtax
Recommends: aragorn, infernal, rnahybrid, rtax
X-End-Category: Analysis of RNA sequences.
X-Begin-Category: Molecular modelling and molecular dynamics
Recommends: \
autodock, autodock-vina, autogrid, concavity, dssp, freecontact,
Recommends: autodock, autodock-vina, autogrid, concavity, dssp, freecontact,
gromacs, hhsuite, mustang, pdb2pqr, raster3d, theseus
Comment: non-free
X-End-Category: Molecular modelling and molecular dynamics
X-Begin-Category: Tools for the molecular biologist.
Recommends: \
melting, mipe, ncbi-epcr, primer3
Recommends: melting, mipe, ncbi-epcr, primer3
Comment: Oligonucleotides and PCR
Recommends: \
acedb-other, disulfinder, ncbi-tools-bin, ncoils, python-cogent,
Recommends: acedb-other, disulfinder, ncbi-tools-bin, ncoils, python-cogent,
readseq, tigr-glimmer, seqan-apps, staden-io-lib-utils
X-End-Category: Tools for the molecular biologist.
X-Begin-Category: Others
Recommends:
\
aevol, python3-biomaj3-cli, bioperl, bioperl-run, cain,
clonalframe, circos, datamash, filo,
prodigal,
python-biopython, python3-biopython, qiime,
r-cran-pvclust,
r-cran-vegan
Recommends:
aevol, python3-biomaj3-cli, bioperl, bioperl-run, cain,
clonalframe, circos, datamash, filo,
prodigal,
python-biopython, python3-biopython, qiime,
r-cran-pvclust,
r-cran-vegan
tasks/cms
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Content Management
Metapackage: false
Description: Debian Med content management systems
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tasks/data
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Medical data
Description: Debian Med drug databases
This metapackage will install free drug databases and related
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tasks/dental
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Dental
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
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tasks/epi
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Epidemiology
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
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tasks/his
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Hospital Information Systems
Description: Debian Med suggestions for Hospital Information Systems
This metapackage contains dependencies for software and that could
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tasks/imaging
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Imaging
Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
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tasks/imaging-dev
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Imaging Development
Description: Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
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tasks/laboratory
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Laboratory
Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
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tasks/oncology
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Oncology
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
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tasks/pharmacy
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Pharmacology
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
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tasks/physics
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Physics
Description: Debian Med packages for medical physicists
This metapackage contains dependencies for a
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tasks/practice
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Practice
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
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tasks/psychology
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ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Psychology
Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
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tasks/rehabilitation
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Rehabilitation
Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
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tasks/research
View file @
ec82b072
Format: https://blends.debian.org/blends/1.1
Task: Research
Description: Debian Med packages for medical research
This metapackage will install tools that are useful for
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