tasks/bio

@@ -280,7 +280,7 @@ Recommends: clonalframe, clonalframeml
 
 Recommends: dssp
 
-Recommends: jellyfish
+Recommends: jellyfish, jellyfish1
 
 Recommends: ballview
 

tasks/bio-dev

@@ -358,3 +358,15 @@ Recommends: python3-airr, python3-presto
 Suggests: libmilib-java, vdjtools
 
 Recommends: python3-bcbio
+
+Suggests: python3-ctdopts, ctdconverter
+
+Recommends: libpll-dev
+
+Suggests: libmodhmm-dev, libsvmloc-dev
+
+Recommends: libstatgen-dev
+
+Recommends: python3-screed
+
+Recommends: python3-treetime

tasks/bio-phylogeny

@@ -160,3 +160,5 @@ Language: Java
 Recommends: spread-phy
 
 Recommends: iqtree
+
+Suggests: python3-treetime

tasks/imaging

@@ -101,7 +101,7 @@ Recommends: crea
 
 Recommends: orthanc
 
-Suggests: orthanc-webviewer, orthanc-dicomweb, orthanc-imagej, orthanc-postgresql
+Suggests: orthanc-webviewer, orthanc-dicomweb, orthanc-imagej, orthanc-postgresql, orthanc-mysql
 
 Recommends: teem-apps
 
@@ -879,3 +879,7 @@ Suggests: science-workflow
 Recommends: dcm2niix
 
 Recommends: orthanc-wsi
+
+Recommends: odil
+
+Suggests: tifffile

tasks/imaging-dev

@@ -146,7 +146,7 @@ Recommends: python-imageio
 
 Recommends: libismrmrd-dev
 
-Recommends: libodil0-dev
+Recommends: libodil-dev
 
 Recommends: libbart-dev, octave-bart
 
@@ -155,3 +155,5 @@ Suggests: libcamp-dev
 Recommends: libcifti-dev
 
 Recommends: libxdf-dev
+
+Recommends: libsimpleitk1-dev, python3-simpleitk