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CMakeInstallation.cmake
View file @ e7af625e
......@@ -33,7 +33,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
EXPORT ${HDF5_EXPORTED_TARGETS}
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
NAMESPACE ${HDF5_PACKAGE}::
NAMESPACE ${HDF_PACKAGE_NAMESPACE}
COMPONENT configinstall
)
endif ()
......@@ -45,7 +45,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
export (
TARGETS ${HDF5_LIBRARIES_TO_EXPORT} ${HDF5_LIB_DEPENDENCIES} ${HDF5_UTILS_TO_EXPORT}
FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
NAMESPACE ${HDF5_PACKAGE}::
NAMESPACE ${HDF_PACKAGE_NAMESPACE}
)
endif ()
endif ()
......@@ -104,6 +104,12 @@ endif ()
# Configure the hdf5-config-version .cmake file for the install directory
#-----------------------------------------------------------------------------
if (NOT HDF5_EXTERNALLY_CONFIGURED)
# 3.11 or greater
#write_basic_package_version_file (
# ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
# VERSION ${HDF5_PACKAGE_VERSION}
# COMPATIBILITY SameMinorVersion
#)
configure_file (
${HDF_RESOURCES_DIR}/hdf5-config-version.cmake.in
${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake @ONLY
......@@ -186,7 +192,7 @@ HDF_README_PROPERTIES(HDF5_BUILD_FORTRAN)
#-----------------------------------------------------------------------------
# Configure the COPYING.txt file for the windows binary package
#-----------------------------------------------------------------------------
if (WIN32)
if (WIN32 OR MINGW)
configure_file (${HDF5_SOURCE_DIR}/COPYING ${HDF5_BINARY_DIR}/COPYING.txt @ONLY)
endif ()
......@@ -206,7 +212,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
${HDF5_SOURCE_DIR}/release_docs/COPYING
${HDF5_SOURCE_DIR}/release_docs/RELEASE.txt
)
if (WIN32)
if (WIN32 OR MINGW)
set (release_files
${release_files}
${HDF5_SOURCE_DIR}/release_docs/USING_HDF5_VS.txt
......@@ -220,7 +226,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
${HDF5_SOURCE_DIR}/release_docs/HISTORY-1_8.txt
${HDF5_SOURCE_DIR}/release_docs/INSTALL
)
if (WIN32)
if (WIN32 OR MINGW)
set (release_files
${release_files}
${HDF5_SOURCE_DIR}/release_docs/INSTALL_Windows.txt
......@@ -288,7 +294,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED AND NOT HDF5_NO_PACKAGES)
set (CPACK_PACKAGE_ICON "${HDF_RESOURCES_EXT_DIR}/hdf.bmp")
set (CPACK_GENERATOR "TGZ")
if (WIN32)
if (WIN32 OR MINGW)
set (CPACK_GENERATOR "ZIP")
if (NSIS_EXECUTABLE)
......@@ -453,7 +459,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
if (HDF5_PACKAGE_EXTLIBS)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
if (WIN32)
if (WIN32 OR MINGW)
set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;ALL;/")
else ()
set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;libraries;/")
......@@ -462,7 +468,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
endif ()
endif ()
if (SZIP_FOUND AND SZIP_USE_EXTERNAL)
if (WIN32)
if (WIN32 OR MINGW)
set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;ALL;/")
else ()
set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;libraries;/")
......
CMakeLists.txt
View file @ e7af625e
cmake_minimum_required (VERSION 3.10)
project (HDF5 C)
if(POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
#-----------------------------------------------------------------------------
# Instructions for use : Normal Build
#
......@@ -10,7 +14,7 @@ project (HDF5 C)
# set CMAKE_INSTALL_PREFIX to the required install path.
# Make install can be used to install all components for system-wide use.
#
if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}")
if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_CURRENT_BINARY_DIR)
MESSAGE(FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n"
"CMAKE_CURRENT_SOURCE_DIR=${CMAKE_CURRENT_SOURCE_DIR}"
" == CMAKE_CURRENT_BINARY_DIR=${CMAKE_CURRENT_BINARY_DIR}\n"
......@@ -28,6 +32,12 @@ if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}")
)
endif ()
# CMake version 3.14 added option --ignore-eol to compare files
# cmake -E compare_files --ignore-eol file1 file2
#if(CMAKE_VERSION VERSION_LESS "3.14.0" AND WIN32)
# MESSAGE(FATAL_ERROR "Windows builds requires a minimum of CMake 3.14")
#endif()
#-----------------------------------------------------------------------------
# Instructions for use : Sub-Project Build
#
......@@ -314,7 +324,7 @@ set (HDF5_PACKAGE_NAME "HDF5")
set (HDF5_PACKAGE_VERSION "${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}")
set (HDF5_PACKAGE_VERSION_MAJOR "${H5_VERS_MAJOR}.${H5_VERS_MINOR}")
set (HDF5_PACKAGE_VERSION_MINOR "${H5_VERS_RELEASE}")
if (NOT "${H5_VERS_SUBRELEASE}" STREQUAL "")
if (H5_VERS_SUBRELEASE)
set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}")
else ()
set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
......@@ -416,18 +426,23 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON)
# Mac OS X Options
#-----------------------------------------------------------------------------
if (HDF5_BUILD_FRAMEWORKS AND NOT BUILD_SHARED_LIBS)
set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries")
set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries" FORCE)
endif ()
#-----------------------------------------------------------------------------
# Option to Build Shared and Static libs, default is both
#-----------------------------------------------------------------------------
option (ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF)
set (H5_ENABLE_STATIC_LIB YES)
if (ONLY_SHARED_LIBS)
set (H5_ENABLE_STATIC_LIB NO)
set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries")
endif ()
option (BUILD_SHARED_LIBS "Build Shared Libraries" ON)
set (H5_ENABLE_SHARED_LIB NO)
if (BUILD_SHARED_LIBS)
set (H5_ENABLE_SHARED_LIB YES)
endif ()
set (H5_ENABLE_STATIC_LIB YES)
set (CMAKE_POSITION_INDEPENDENT_CODE ON)
#-----------------------------------------------------------------------------
......@@ -507,7 +522,7 @@ endif ()
# and we need to call the executable from inside the CMake configuration
#-----------------------------------------------------------------------------
set (EXE_EXT "")
if (WIN32)
if (WIN32 OR MINGW)
set (EXE_EXT ".exe")
add_definitions (-D_BIND_TO_CURRENT_VCLIBS_VERSION=1)
add_definitions (-D_CRT_SECURE_NO_WARNINGS)
......@@ -562,6 +577,27 @@ endif ()
include (${HDF_RESOURCES_DIR}/HDFCompilerFlags.cmake)
set (CMAKE_MODULE_PATH ${HDF_RESOURCES_DIR} ${HDF_RESOURCES_EXT_DIR} ${CMAKE_MODULE_PATH})
#-----------------------------------------------------------------------------
# Option to Enable HDFS
#-----------------------------------------------------------------------------
option (HDF5_ENABLE_HDFS "Enable HDFS" OFF)
if (HDF5_ENABLE_HDFS)
find_package(JNI REQUIRED)
if (JNI_FOUND)
set (H5_HAVE_LIBJVM 1)
endif ()
find_package(HDFS REQUIRED)
if (HDFS_FOUND)
set (H5_HAVE_LIBHDFS 1)
set (H5_HAVE_HDFS_H 1)
if (NOT MSVC)
list (APPEND LINK_LIBS -pthread)
endif ()
else ()
message (FATAL_ERROR "Set to use libhdfs library, but could not find or use libhdfs. Please verify that the path to HADOOP_HOME is valid, and/or reconfigure without HDF5_ENABLE_HDFS")
endif ()
endif ()
#-----------------------------------------------------------------------------
# Option to Enable MPI Parallel
#-----------------------------------------------------------------------------
......@@ -610,35 +646,34 @@ if (H5_HAVE_PARALLEL)
endif ()
endif ()
set (DEFAULT_API_VERSION "v110")
#option (DEFAULT_API_VERSION "Enable v1.10 API (v16, v18, v110)" "v110")
set (DEFAULT_API_VERSION "v110" CACHE STRING "Enable v1.10 API (v16, v18, v110)")
set_property (CACHE DEFAULT_API_VERSION PROPERTY STRINGS v16 v18 v110)
#-----------------------------------------------------------------------------
# Option to use 1.6.x API
#-----------------------------------------------------------------------------
option (HDF5_USE_16_API_DEFAULT "Use the HDF5 1.6.x API by default" OFF)
set (H5_USE_16_API_DEFAULT 0)
if (HDF5_USE_16_API_DEFAULT)
if (DEFAULT_API_VERSION MATCHES "v16")
set (H5_USE_16_API_DEFAULT 1)
set (DEFAULT_API_VERSION "v16")
endif ()
#-----------------------------------------------------------------------------
# Option to use 1.8.x API
#-----------------------------------------------------------------------------
option (HDF5_USE_18_API_DEFAULT "Use the HDF5 1.8.x API by default" OFF)
set (H5_USE_18_API_DEFAULT 0)
if (HDF5_USE_18_API_DEFAULT)
if (DEFAULT_API_VERSION MATCHES "v18")
set (H5_USE_18_API_DEFAULT 1)
set (DEFAULT_API_VERSION "v18")
endif ()
#-----------------------------------------------------------------------------
# Option to use 1.10.x API
#-----------------------------------------------------------------------------
option (HDF5_USE_110_API_DEFAULT "Use the HDF5 1.10.x API by default" ON)
if (NOT DEFAULT_API_VERSION)
set (DEFAULT_API_VERSION "v110")
endif ()
set (H5_USE_110_API_DEFAULT 0)
if (HDF5_USE_110_API_DEFAULT)
if (DEFAULT_API_VERSION MATCHES "v110")
set (H5_USE_110_API_DEFAULT 1)
set (DEFAULT_API_VERSION "v110")
endif ()
#-----------------------------------------------------------------------------
......@@ -667,14 +702,17 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
endif ()
endif ()
endif ()
#-----------------------------------------------------------------------------
# Option to use threadsafe
#-----------------------------------------------------------------------------
option (HDF5_ENABLE_THREADSAFE "Enable thread-safety" OFF)
if (HDF5_ENABLE_THREADSAFE)
# check for unsupported options
message (STATUS " **** thread-safety option not supported with static library **** ")
message (STATUS " **** thread-safety option will not be used building static library **** ")
if (WIN32 OR MINGW)
message (STATUS " **** thread-safety option not supported with static library **** ")
message (STATUS " **** thread-safety option will not be used building static library **** ")
endif ()
if (HDF5_ENABLE_PARALLEL)
if (NOT ALLOW_UNSUPPORTED)
message (FATAL_ERROR " **** parallel and thread-safety options are not supported **** ")
......@@ -712,9 +750,9 @@ if (HDF5_ENABLE_THREADSAFE)
endif ()
endif ()
set(THREADS_PREFER_PTHREAD_FLAG ON)
find_package(Threads)
if (NOT Threads_FOUND)
message (STATUS " **** thread-safe package not found - threads still might work **** ")
find_package(Threads REQUIRED)
if (Threads_FOUND)
set (H5_HAVE_THREADSAFE 1)
endif ()
endif ()
......@@ -725,13 +763,17 @@ add_subdirectory (src)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
add_dependencies (${HDF5_LIB_TARGET} ZLIB)
if (NOT ONLY_SHARED_LIBS)
add_dependencies (${HDF5_LIB_TARGET} ZLIB)
endif ()
if (BUILD_SHARED_LIBS)
add_dependencies (${HDF5_LIBSH_TARGET} ZLIB)
endif ()
endif ()
if (SZIP_FOUND AND SZIP_USE_EXTERNAL)
add_dependencies (${HDF5_LIB_TARGET} SZIP)
if (NOT ONLY_SHARED_LIBS)
add_dependencies (${HDF5_LIB_TARGET} SZIP)
endif ()
if (BUILD_SHARED_LIBS)
add_dependencies (${HDF5_LIBSH_TARGET} SZIP)
endif ()
......@@ -744,7 +786,7 @@ endif ()
option (BUILD_TESTING "Build HDF5 Unit Testing" ON)
if (BUILD_TESTING)
set (DART_TESTING_TIMEOUT 1200
CACHE INTEGER
CACHE STRING
"Timeout in seconds for each test (default 1200=20minutes)"
)
......@@ -828,7 +870,7 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
message (STATUS "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}")
# Building with PGI requires CMake 3.3 or greater because previous versions
# of CMake add the wrong compiler flag for the PGI Fortran compiler.
if ("${CMAKE_Fortran_COMPILER_ID}" MATCHES "PGI" AND "${CMAKE_VERSION}" VERSION_LESS "3.3")
if (CMAKE_Fortran_COMPILER_ID MATCHES "PGI" AND CMAKE_VERSION VERSION_LESS "3.3")
message (FATAL_ERROR " **** PGI FORTRAN REQUIRES CMAKE VERSION 3.3 OR GREATER **** ")
endif ()
......
COPYING
View file @ e7af625e
......@@ -3,10 +3,10 @@ HDF5 (Hierarchical Data Format 5) Software Library and Utilities
-----------------------------------------------------------------------------
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 2006-2018, The HDF Group.
Copyright 2006 by The HDF Group.
NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 1998-2006, The Board of Trustees of the University of Illinois.
Copyright 1998-2006 by The Board of Trustees of the University of Illinois.
All rights reserved.
......@@ -28,9 +28,20 @@ provided that the following conditions are met:
DISCLAIMER:
THIS SOFTWARE IS PROVIDED BY THE HDF GROUP AND THE CONTRIBUTORS
"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. IN NO EVENT SHALL THE HDF GROUP OR THE CONTRIBUTORS BE LIABLE FOR ANY DAMAGES SUFFERED BY THE USERS ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. IN NO
EVENT SHALL THE HDF GROUP OR THE CONTRIBUTORS BE LIABLE FOR ANY DAMAGES
SUFFERED BY THE USERS ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
You are under no obligation whatsoever to provide any bug fixes, patches, or upgrades to the features, functionality or performance of the source code ("Enhancements") to anyone; however, if you choose to make your Enhancements available either publicly, or directly to The HDF Group, without imposing a separate written license agreement for such Enhancements, then you hereby grant the following license: a non-exclusive, royalty-free perpetual license to install, use, modify, prepare derivative works, incorporate into other computer software, distribute, and sublicense such enhancements or derivative works thereof, in binary and source code form.
You are under no obligation whatsoever to provide any bug fixes, patches, or
upgrades to the features, functionality or performance of the source code
("Enhancements") to anyone; however, if you choose to make your Enhancements
available either publicly, or directly to The HDF Group, without imposing a
separate written license agreement for such Enhancements, then you hereby
grant the following license: a non-exclusive, royalty-free perpetual license
to install, use, modify, prepare derivative works, incorporate into other
computer software, distribute, and sublicense such enhancements or derivative
works thereof, in binary and source code form.
-----------------------------------------------------------------------------
-----------------------------------------------------------------------------
......@@ -44,7 +55,9 @@ http://support.hdfgroup.org/ftp/HDF5/releases/COPYING_LBNL_HDF5.
-----------------------------------------------------------------------------
Contributors: National Center for Supercomputing Applications (NCSA) at
the University of Illinois, Fortner Software, Unidata Program Center (netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip), and Digital Equipment Corporation (DEC).
the University of Illinois, Fortner Software, Unidata Program Center
(netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler
(gzip), and Digital Equipment Corporation (DEC).
-----------------------------------------------------------------------------
......@@ -67,20 +80,20 @@ and/or accompanying materials:
for the operation of UC LLNL.
DISCLAIMER:
This work was prepared as an account of work sponsored by an agency of
the United States Government. Neither the United States Government nor
the University of California nor any of their employees, makes any
warranty, express or implied, or assumes any liability or responsibility
for the accuracy, completeness, or usefulness of any information,
apparatus, product, or process disclosed, or represents that its use
would not infringe privately- owned rights. Reference herein to any
specific commercial products, process, or service by trade name,
trademark, manufacturer, or otherwise, does not necessarily constitute
or imply its endorsement, recommendation, or favoring by the United
States Government or the University of California. The views and
opinions of authors expressed herein do not necessarily state or reflect
those of the United States Government or the University of California,
and shall not be used for advertising or product endorsement purposes.
THIS WORK WAS PREPARED AS AN ACCOUNT OF WORK SPONSORED BY AN AGENCY OF
THE UNITED STATES GOVERNMENT. NEITHER THE UNITED STATES GOVERNMENT NOR
THE UNIVERSITY OF CALIFORNIA NOR ANY OF THEIR EMPLOYEES, MAKES ANY
WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY OR RESPONSIBILITY
FOR THE ACCURACY, COMPLETENESS, OR USEFULNESS OF ANY INFORMATION,
APPARATUS, PRODUCT, OR PROCESS DISCLOSED, OR REPRESENTS THAT ITS USE
WOULD NOT INFRINGE PRIVATELY- OWNED RIGHTS. REFERENCE HEREIN TO ANY
SPECIFIC COMMERCIAL PRODUCTS, PROCESS, OR SERVICE BY TRADE NAME,
TRADEMARK, MANUFACTURER, OR OTHERWISE, DOES NOT NECESSARILY CONSTITUTE
OR IMPLY ITS ENDORSEMENT, RECOMMENDATION, OR FAVORING BY THE UNITED
STATES GOVERNMENT OR THE UNIVERSITY OF CALIFORNIA. THE VIEWS AND
OPINIONS OF AUTHORS EXPRESSED HEREIN DO NOT NECESSARILY STATE OR REFLECT
THOSE OF THE UNITED STATES GOVERNMENT OR THE UNIVERSITY OF CALIFORNIA,
AND SHALL NOT BE USED FOR ADVERTISING OR PRODUCT ENDORSEMENT PURPOSES.
-----------------------------------------------------------------------------
......@@ -90,3 +103,4 @@ in HDF Products (www.hdfgroup.org/doc_resource/SZIP/) for further details.
-----------------------------------------------------------------------------
CTestConfig.cmake
View file @ e7af625e
......@@ -50,5 +50,5 @@ set (CTEST_TEST_TIMEOUT 1200 CACHE STRING
set (DART_TESTING_TIMEOUT 1200 CACHE STRING
"Maximum time allowed before CTest will kill the test." FORCE)
SET(CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING
set (CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING
"How long to wait between timed-out CTest submissions.")
MANIFEST
View file @ e7af625e
......@@ -71,12 +71,15 @@
./bin/errors _DO_NOT_DISTRIBUTE_
./bin/genparser
./bin/gcov_script _DO_NOT_DISTRIBUTE_
./bin/h5cc.in
./bin/h5redeploy.in
./bin/h5vers
./bin/iostats
./bin/locate_sw
./bin/make_err
./bin/make_overflow
./bin/make_vers
./bin/Makefile.am
./bin/makehelp
./bin/mkdirs
./bin/newer
......@@ -92,10 +95,6 @@
./bin/timekeeper _DO_NOT_DISTRIBUTE_
./bin/trace
./bin/yodconfigure
./bin/batch/cori_ctestP.sl.in.cmake
./bin/batch/cori_ctestS.sl.in.cmake
./bin/batch/cori_knl_ctestP.sl.in.cmake
./bin/batch/cori_knl_ctestS.sl.in.cmake
./bin/batch/ctestP.lsf.in.cmake
./bin/batch/ctestP.sl.in.cmake
./bin/batch/ctestS.lsf.in.cmake
......@@ -103,6 +102,7 @@
./bin/batch/knl_ctestP.sl.in.cmake
./bin/batch/knl_ctestS.sl.in.cmake
./bin/batch/knl_H5detect.sl.in.cmake
./bin/batch/ctest.qsub.in.cmake
./bin/batch/ray_ctestP.lsf.in.cmake
./bin/batch/ray_ctestS.lsf.in.cmake
./bin/batch/raybsub
......@@ -264,7 +264,6 @@
./fortran/src/h5fc.in
./fortran/src/hdf5_fortrandll.def.in
./fortran/test/Makefile.am
./fortran/test/fflush1.F90
./fortran/test/fflush2.F90
......@@ -461,6 +460,8 @@
./release_docs/INSTALL_parallel
./release_docs/INSTALL_Warnings.txt
./release_docs/INSTALL_Windows.txt
./release_docs/README_HDF5_CMake
./release_docs/README_HPC
./release_docs/RELEASE.txt
./release_docs/README_HDF5_CMake
./release_docs/README_HPC
......@@ -542,8 +543,8 @@
./src/H5CS.c
./src/H5CSprivate.h
./src/H5CX.c
./src/H5CXprivate.h
./src/H5CXmodule.h
./src/H5CXprivate.h
./src/H5D.c
./src/H5Dbtree.c
./src/H5Dbtree2.c
......@@ -633,6 +634,8 @@
./src/H5FDdrvr_module.h
./src/H5FDfamily.c
./src/H5FDfamily.h
./src/H5FDhdfs.c
./src/H5FDhdfs.h
./src/H5FDint.c
./src/H5FDlog.c
./src/H5FDlog.h
......@@ -643,9 +646,13 @@
./src/H5FDmpio.h
./src/H5FDmulti.c
./src/H5FDmulti.h
./src/H5FDros3.c
./src/H5FDros3.h
./src/H5FDpkg.h
./src/H5FDprivate.h
./src/H5FDpublic.h
./src/H5FDs3comms.h
./src/H5FDs3comms.c
./src/H5FDsec2.c
./src/H5FDsec2.h
./src/H5FDspace.c
......@@ -971,6 +978,10 @@
./test/evict_on_close.c
./test/extend.c
./test/external.c
./test/external_common.c
./test/external_common.h
./test/external_env.c
./test/external_fname.h
./test/error_test.c
./test/err_compat.c
./test/filter_error.h5
......@@ -988,6 +999,7 @@
./test/file_image.c
./test/file_image_core_test.h5
./test/fill_old.h5
./test/fill18.h5
./test/fillval.c
./test/filter_fail.c
./test/filter_plugin.c
......@@ -1038,6 +1050,7 @@
./test/h5fc_ext_none.h5
./test/h5test.c
./test/h5test.h
./test/hdfs.c
./test/hyperslab.c
./test/istore.c
./test/le_data.h5
......@@ -1061,7 +1074,9 @@
./test/paged_nopersist.h5
./test/paged_persist.h5
./test/reserved.c
./test/ros3.c
./test/pool.c
./test/s3comms.c
./test/set_extent.c
# ====distribute this for now. See HDFFV-8236====
./test/space_overflow.c
......@@ -1092,9 +1107,12 @@
./test/tcoords.c
./test/testabort_fail.sh.in
./test/testcheck_version.sh.in
./test/testexternal_env.sh.in
./test/testerror.sh.in
./test/testlinks_env.sh.in
./test/test_filter_plugin.sh.in
./test/test_filters_le.h5
./test/test_filters_be.h5
./test/testflushrefresh.sh.in
./test/testframe.c
./test/testhdf5.c
......@@ -1104,6 +1122,7 @@
./test/testmeta.c
./test/testswmr.sh.in
./test/testvdsswmr.sh.in
./test/testvds_env.sh.in
./test/tfile.c
./test/tgenprop.c
./test/th5o.c
......@@ -1143,11 +1162,10 @@
./test/use_disable_mdc_flushes.c
./test/use.h
./test/vfd.c
./test/test_filters_le.h5
./test/test_filters_be.h5
./test/gen_filters.c
./test/chunk_info.c
./test/vds.c
./test/vds_env.c
./test/vds_swmr.h
./test/vds_swmr_gen.c
./test/vds_swmr_reader.c
......@@ -1450,6 +1468,7 @@
./tools/test/h5repack/dynlib_rpk.c
./tools/test/h5repack/dynlib_vrpk.c
./tools/test/h5repack/h5repack.sh.in
./tools/test/h5repack/h5repackgentest.c
./tools/test/h5repack/h5repack_plugin.sh.in
./tools/test/h5repack/h5repacktst.c
./tools/test/h5repack/testh5repack_detect_szip.c
......@@ -1509,12 +1528,13 @@
./tools/lib/io_timer.c
./tools/lib/io_timer.h
./tools/libtest/Makefile.am
./tools/libtest/h5tools_test_utils.c
./tools/src/misc/Makefile.am
./tools/src/misc/h5cc.in
./tools/src/misc/h5clear.c
./tools/src/misc/h5debug.c
./tools/src/misc/h5mkgrp.c
./tools/src/misc/h5redeploy.in
./tools/src/misc/h5repart.c
./tools/test/misc/Makefile.am
./tools/test/misc/h5repart_gentest.c
......@@ -1662,6 +1682,7 @@
./tools/testfiles/h5dump-help.txt
./tools/testfiles/non_existing.ddl
./tools/testfiles/packedbits.ddl
./tools/testfiles/t128bit_float.h5
./tools/testfiles/taindices.h5
./tools/testfiles/tall-1.ddl
./tools/testfiles/tall-2.ddl
......@@ -2513,12 +2534,25 @@
./tools/test/h5repack/testfiles/h5repack_early.h5
./tools/test/h5repack/testfiles/h5repack_ext.bin
./tools/test/h5repack/testfiles/h5repack_ext.h5
./tools/test/h5repack/testfiles/h5repack_f32le.h5
./tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_f32le_ex.h5
./tools/test/h5repack/testfiles/h5repack_fill.h5
./tools/test/h5repack/testfiles/h5repack_filters.h5
./tools/test/h5repack/testfiles/h5repack_fletcher.h5
./tools/test/h5repack/testfiles/h5repack_fsm_aggr_nopersist.h5
./tools/test/h5repack/testfiles/h5repack_fsm_aggr_persist.h5
./tools/test/h5repack/testfiles/h5repack_hlink.h5
./tools/test/h5repack/testfiles/h5repack_int32le_1d.h5
./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat
./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5
./tools/test/h5repack/testfiles/h5repack_int32le_2d.h5
./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5
./tools/test/h5repack/testfiles/h5repack_int32le_3d.h5
./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5
./tools/test/h5repack/testfiles/h5repack.info
./tools/test/h5repack/testfiles/h5repack_layout.h5
./tools/test/h5repack/testfiles/h5repack_layouto.h5
......@@ -2537,6 +2571,12 @@
./tools/test/h5repack/testfiles/h5repack_shuffle.h5
./tools/test/h5repack/testfiles/h5repack_soffset.h5
./tools/test/h5repack/testfiles/h5repack_szip.h5
./tools/test/h5repack/testfiles/h5repack_uint8be.h5
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5
./tools/test/h5repack/testfiles/ublock.bin
./tools/test/h5repack/testfiles/crtorder.tordergr.h5.ddl
./tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl
......@@ -2974,6 +3014,8 @@
./java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
./java/src/hdf/hdf5lib/structs/H5E_error2_t.java
./java/src/hdf/hdf5lib/structs/H5F_info2_t.java
./java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
./java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
./java/src/hdf/hdf5lib/structs/H5G_info_t.java
./java/src/hdf/hdf5lib/structs/H5L_info_t.java
./java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
......@@ -3137,6 +3179,8 @@
./java/test/testfiles/JUnit-TestH5P.txt
./java/test/testfiles/JUnit-TestH5PData.txt
./java/test/testfiles/JUnit-TestH5Pfapl.txt
./java/test/testfiles/JUnit-TestH5Pfaplhdfs.txt
./java/test/testfiles/JUnit-TestH5Pfapls3.txt
./java/test/testfiles/JUnit-TestH5Plist.txt
./java/test/testfiles/JUnit-TestH5Pvirtual.txt
./java/test/testfiles/JUnit-TestH5PL.txt
......@@ -3174,6 +3218,8 @@
./java/test/TestH5P.java
./java/test/TestH5PData.java
./java/test/TestH5Pfapl.java
./java/test/TestH5Pfaplhdfs.java
./java/test/TestH5Pfapls3.java
./java/test/TestH5Plist.java
./java/test/TestH5Pvirtual.java
./java/test/TestH5PL.java
......@@ -3194,9 +3240,12 @@
./java/lib/ext/slf4j-simple-1.7.25.jar
# CMake-specific Files
./config/toolchain/build32.cmake
./config/toolchain/clang.cmake
./config/toolchain/crayle.cmake
./config/toolchain/GCC.cmake
./config/toolchain/intel.cmake
./config/toolchain/mingw64.cmake
./config/toolchain/PGI.cmake
./config/cmake/cacheinit.cmake
......@@ -3205,8 +3254,7 @@
./config/cmake/ConfigureChecks.cmake
./config/cmake/CPack.Info.plist.in
./config/cmake/CTestCustom.cmake
./config/cmake/FindHDFJAVA.cmake.in
./config/cmake/FindJNI.cmake
./config/cmake/FindHDFS.cmake
./config/cmake/H5cxx_config.h.in
./config/cmake/H5pubconf.h.in
./config/cmake/hdf5-config.cmake.in
......@@ -3314,6 +3362,8 @@
./testpar/CMakeVFDTests.cmake
./tools/CMakeLists.txt
./tools/lib/CMakeLists.txt
./tools/libtest/CMakeLists.txt
./tools/libtest/CMakeTests.cmake
./tools/src/CMakeLists.txt
./tools/test/CMakeLists.txt
./tools/src/h5copy/CMakeLists.txt
......@@ -3328,6 +3378,7 @@
./tools/test/h5dump/CMakeTestsPBITS.cmake
./tools/test/h5dump/CMakeTestsXML.cmake
./tools/test/h5dump/CMakeTestsVDS.cmake
./tools/test/h5dump/CMakeVFDTests.cmake
./tools/src/h5format_convert/CMakeLists.txt
./tools/test/h5format_convert/CMakeLists.txt
./tools/test/h5format_convert/CMakeTests.cmake
......@@ -3367,6 +3418,7 @@
# CMake-specific HPC Scripts
./config/cmake/scripts/HPC/sbatch-HDF5options.cmake
./config/cmake/scripts/HPC/bsub-HDF5options.cmake
./config/cmake/scripts/HPC/qsub-HDF5options.cmake
./config/cmake/scripts/HPC/raybsub-HDF5options.cmake
# Files generated by autogen
......@@ -3382,6 +3434,7 @@
./c++/examples/Makefile.in
./c++/Makefile.in
./configure
./bin/Makefile.in
./c++/src/Makefile.in
./c++/test/Makefile.in
./examples/Makefile.in
......@@ -3432,6 +3485,7 @@
./testpar/Makefile.in
./tools/Makefile.in
./tools/lib/Makefile.in
./tools/libtest/Makefile.in
./tools/src/Makefile.in
./tools/src/h5copy/Makefile.in
./tools/src/h5diff/Makefile.in
......
Makefile.am
View file @ e7af625e
......@@ -49,11 +49,6 @@ include $(top_srcdir)/config/commence.am
# Conditionals. These conditionals are defined during configure
# Define each variable to empty if it is not used to placate pmake
if BUILD_PARALLEL_CONDITIONAL
TESTPARALLEL_DIR =testpar
else
TESTPARALLEL_DIR=
endif
if BUILD_CXX_CONDITIONAL
CXX_DIR =c++
else
......@@ -74,9 +69,24 @@ if BUILD_HDF5_HL_CONDITIONAL
else
HDF5_HL_DIR=
endif
if BUILD_TESTS_CONDITIONAL
TESTSERIAL_DIR =test
else
TESTSERIAL_DIR=
endif
if BUILD_TESTS_PARALLEL_CONDITIONAL
TESTPARALLEL_DIR =testpar
else
TESTPARALLEL_DIR=
endif
if BUILD_TOOLS_CONDITIONAL
TOOLS_DIR =tools
else
TOOLS_DIR=
endif
SUBDIRS = src test $(TESTPARALLEL_DIR) tools . $(CXX_DIR) $(FORTRAN_DIR) \
$(JAVA_DIR) $(HDF5_HL_DIR)
SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin $(TOOLS_DIR) . \
$(CXX_DIR) $(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR)
DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples java
# Some files generated during configure that should be cleaned
......
Makefile.in
View file @ e7af625e
......@@ -208,8 +208,7 @@ am__DIST_COMMON = $(srcdir)/Makefile.in $(top_srcdir)/bin/compile \
$(top_srcdir)/bin/config.guess $(top_srcdir)/bin/config.sub \
$(top_srcdir)/bin/install-sh $(top_srcdir)/bin/ltmain.sh \
$(top_srcdir)/bin/missing $(top_srcdir)/config/commence.am \
COPYING bin/COPYING bin/README bin/compile bin/config.guess \
bin/config.sub bin/install-sh bin/ltmain.sh bin/missing
COPYING
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
distdir = $(PACKAGE)-$(VERSION)
top_distdir = $(distdir)
......@@ -323,7 +322,6 @@ FC_VERSION = @FC_VERSION@
FGREP = @FGREP@
FORTRAN_C_LONG_DOUBLE_IS_UNIQUE = @FORTRAN_C_LONG_DOUBLE_IS_UNIQUE@
FORTRAN_HAVE_C_LONG_DOUBLE = @FORTRAN_HAVE_C_LONG_DOUBLE@
FORTRAN_SIZEOF_LONG_DOUBLE = @FORTRAN_SIZEOF_LONG_DOUBLE@
FSEARCH_DIRS = @FSEARCH_DIRS@
Fortran_COMPILER_ID = @Fortran_COMPILER_ID@
GREP = @GREP@
......@@ -346,9 +344,12 @@ H5_VERSION = @H5_VERSION@
HADDR_T = @HADDR_T@
HAVE_DMALLOC = @HAVE_DMALLOC@
HAVE_Fortran_INTEGER_SIZEOF_16 = @HAVE_Fortran_INTEGER_SIZEOF_16@
HAVE_LIBHDFS = @HAVE_LIBHDFS@
HAVE_PTHREAD = @HAVE_PTHREAD@
HDF5_HL = @HDF5_HL@
HDF5_INTERFACES = @HDF5_INTERFACES@
HDF5_TESTS = @HDF5_TESTS@
HDF5_TOOLS = @HDF5_TOOLS@
HDF_CXX = @HDF_CXX@
HDF_FORTRAN = @HDF_FORTRAN@
HDF_JAVA = @HDF_JAVA@
......@@ -375,6 +376,7 @@ JAVA_JUNIT = @JAVA_JUNIT@
JAVA_PATH_NAME = @JAVA_PATH_NAME@
JAVA_VERSION = @JAVA_VERSION@
JNIFLAGS = @JNIFLAGS@
JNI_LDFLAGS = @JNI_LDFLAGS@
JUNIT = @JUNIT@
LARGE_PARALLEL_IO = @LARGE_PARALLEL_IO@
LD = @LD@
......@@ -429,6 +431,7 @@ PREADWRITE = @PREADWRITE@
PROFILING = @PROFILING@
RANLIB = @RANLIB@
ROOT = @ROOT@
ROS3_VFD = @ROS3_VFD@
RUNPARALLEL = @RUNPARALLEL@
RUNSERIAL = @RUNSERIAL@
R_INTEGER = @R_INTEGER@
......@@ -453,7 +456,6 @@ UNAME_INFO = @UNAME_INFO@
USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
USE_FILTER_SZIP = @USE_FILTER_SZIP@
USINGMEMCHECKER = @USINGMEMCHECKER@
UUDECODE = @UUDECODE@
VERSION = @VERSION@
WORDS_BIGENDIAN = @WORDS_BIGENDIAN@
_ACJNI_JAVAC = @_ACJNI_JAVAC@
......@@ -572,7 +574,7 @@ TRACE = perl $(top_srcdir)/bin/trace
# Some files/directories generated during check that should be cleaned
CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *-tmp
@BUILD_PARALLEL_CONDITIONAL_FALSE@TESTPARALLEL_DIR =
@BUILD_CXX_CONDITIONAL_FALSE@CXX_DIR =
# Define subdirectories to build.
# Add this directory to SUBDIRS so that examples get built after tools
......@@ -584,8 +586,6 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *-tmp
# Conditionals. These conditionals are defined during configure
# Define each variable to empty if it is not used to placate pmake
@BUILD_PARALLEL_CONDITIONAL_TRUE@TESTPARALLEL_DIR = testpar
@BUILD_CXX_CONDITIONAL_FALSE@CXX_DIR =
@BUILD_CXX_CONDITIONAL_TRUE@CXX_DIR = c++
@BUILD_FORTRAN_CONDITIONAL_FALSE@FORTRAN_DIR =
@BUILD_FORTRAN_CONDITIONAL_TRUE@FORTRAN_DIR = fortran
......@@ -593,8 +593,14 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.clog2 *-tmp
@BUILD_JAVA_CONDITIONAL_TRUE@JAVA_DIR = java
@BUILD_HDF5_HL_CONDITIONAL_FALSE@HDF5_HL_DIR =
@BUILD_HDF5_HL_CONDITIONAL_TRUE@HDF5_HL_DIR = hl
SUBDIRS = src test $(TESTPARALLEL_DIR) tools . $(CXX_DIR) $(FORTRAN_DIR) \
$(JAVA_DIR) $(HDF5_HL_DIR)
@BUILD_TESTS_CONDITIONAL_FALSE@TESTSERIAL_DIR =
@BUILD_TESTS_CONDITIONAL_TRUE@TESTSERIAL_DIR = test
@BUILD_TESTS_PARALLEL_CONDITIONAL_FALSE@TESTPARALLEL_DIR =
@BUILD_TESTS_PARALLEL_CONDITIONAL_TRUE@TESTPARALLEL_DIR = testpar
@BUILD_TOOLS_CONDITIONAL_FALSE@TOOLS_DIR =
@BUILD_TOOLS_CONDITIONAL_TRUE@TOOLS_DIR = tools
SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin $(TOOLS_DIR) . \
$(CXX_DIR) $(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR)
DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples java
......
README.txt
View file @ e7af625e
HDF5 version 1.10.5 released on 2019-02-25
HDF5 version 1.10.6 released on 2019-12-23
------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
......
bin/Makefile.am 0 → 100644
View file @ e7af625e
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
## Makefile.am
## Run automake to generate a Makefile.in from this file.
#
# HDF5 Library Makefile(.in)
#
include $(top_srcdir)/config/commence.am
# Include src directory
AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
# These are our main targets
bin_SCRIPTS=h5redeploy
# Tell automake to clean h5redeploy script
CLEANFILES=h5redeploy
# These were generated by configure. Remove them only when distclean.
DISTCLEANFILES=h5cc
# All programs rely on hdf5 library and h5tools library
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
# How to build h5redeploy script
h5redeploy: h5redeploy.in
@cp $(srcdir)/$@.in $@
# h5cc needs custom install and uninstall rules, since it may be
# named h5pcc if hdf5 is being built in parallel mode.
if BUILD_PARALLEL_CONDITIONAL
H5CC_NAME=h5pcc
else
H5CC_NAME=h5cc
endif
$(DESTDIR)$(bindir):
echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
$(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1;
install-exec-local: $(DESTDIR)$(bindir)
@$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
uninstall-local:
@$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)
include $(top_srcdir)/config/conclude.am
bin/Makefile.in 0 → 100644
View file @ e7af625e
This diff is collapsed.
bin/batch/cori_ctestP.sl.in.cmake deleted 100644 → 0
View file @ 0c915bfc
#!/bin/bash
#SBATCH -C haswell
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/cori_ctestS.sl.in.cmake deleted 100644 → 0
View file @ 0c915bfc
#!/bin/bash
#SBATCH -C haswell
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
echo "Done running $CMD"
bin/batch/cori_knl_ctestP.sl.in.cmake deleted 100644 → 0
View file @ 0c915bfc
#!/bin/bash
#SBATCH -C knl,quad,cache
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/cori_knl_ctestS.sl.in.cmake deleted 100644 → 0
View file @ 0c915bfc
#!/bin/bash
#SBATCH -C knl,quad, cache
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
echo "Done running $CMD"
bin/batch/ctest.qsub.in.cmake 0 → 100644
View file @ e7af625e
#!/bin/bash -l
if [ $# -gt 0 ]; then
SUMMARY_FILE=$1
fi
ACCOUNT_ID=@ACCOUNT_ID@
echo "Run parallel test command. Test output will be in build/${SUMMARY_FILE}"
CTEST_CMD=`which ctest`
#SKIPTESTS <<KEYWORD:script inserts list of skips tests here -- don't remove>>
cd @HDF5_BINARY_DIR@
if [[ $SUMMARY_FILE == *"ctestS"* ]]; then
CMD="${CTEST_CMD} . -E MPI_TEST_ -C Release -j 32 -T test"
else
CMD="${CTEST_CMD} . -R MPI_TEST_ ${SKIP_TESTS} -C Release -T test"
fi
qsub -t 60 -n 1 -q debug-flat-quad -A ${ACCOUNT_ID} ${CMD} >& ${SUMMARY_FILE}
echo "Done running ctest parallel command."
bin/batch/ctestP.lsf.in.cmake
View file @ e7af625e
......@@ -14,6 +14,6 @@
cd @HDF5_BINARY_DIR@
echo "Run parallel test command. Test output will be in build/ctestP.out"
ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
echo "Done running ctest parallel command."
bin/batch/ctestP.sl.in.cmake
View file @ e7af625e
......@@ -8,9 +8,7 @@
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
echo "Done running ctestP.sl"
bin/batch/ctestS.lsf.in.cmake
View file @ e7af625e
......@@ -11,7 +11,7 @@
cd @HDF5_BINARY_DIR@
echo "Run command. Test output will be in build/ctestS.out"
ctest . -E 'TEST_PAR|PH5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
ctest . -E MPI_TEST_ -C Release -j 32 -T test >& ctestS.out
##$CMD >& ctestS.out
echo "Done running command."
......
bin/batch/knl_ctestP.sl.in.cmake
View file @ e7af625e
......@@ -6,13 +6,11 @@
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
#run parallel tests except t_cache_image test
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/ray_ctestP.lsf.in.cmake
View file @ e7af625e
......@@ -15,6 +15,6 @@
cd @HDF5_BINARY_DIR@
echo "Run parallel test command. Test output will be in build/ctestP.out"
ctest . -R 'MPI_TEST_' -E t_cache_image -C Release -T test >& ctestP.out
ctest . -R 'MPI_TEST_' -C Release -T test >& ctestP.out
echo "Done running ctest parallel command."