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CMakeInstallation.cmake
View file @ ec619413
......@@ -23,16 +23,6 @@ if (WIN32)
find_program (WIX_EXECUTABLE candle PATHS "${CPACK_WIX_ROOT}/bin")
endif ()
#-----------------------------------------------------------------------------
# Add file(s) to CMake Install
#-----------------------------------------------------------------------------
if (NOT HDF5_INSTALL_NO_DEVELOPMENT)
install (
FILES ${PROJECT_BINARY_DIR}/H5pubconf.h
DESTINATION ${HDF5_INSTALL_INCLUDE_DIR}
COMPONENT headers
)
endif ()
#-----------------------------------------------------------------------------
# Add Target(s) to CMake Install for import into other projects
......
CMakeLists.txt
View file @ ec619413
cmake_minimum_required (VERSION 3.10)
PROJECT (HDF5 C CXX)
project (HDF5 C)
#-----------------------------------------------------------------------------
# Instructions for use : Normal Build
......@@ -195,9 +195,9 @@ set (HDF5_JAVA_JNI_SRC_DIR ${HDF5_SOURCE_DIR}/java/src/jni)
set (HDF5_JAVA_HDF5_SRC_DIR ${HDF5_SOURCE_DIR}/java/src/hdf)
set (HDF5_JAVA_TEST_SRC_DIR ${HDF5_SOURCE_DIR}/java/test)
set (HDF5_JAVA_LIB_DIR ${HDF5_SOURCE_DIR}/java/lib)
set (HDF5_JAVA_LOGGING_JAR ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.5.jar)
set (HDF5_JAVA_LOGGING_NOP_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.5.jar)
set (HDF5_JAVA_LOGGING_SIMPLE_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.5.jar)
set (HDF5_JAVA_LOGGING_JAR ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.25.jar)
set (HDF5_JAVA_LOGGING_NOP_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.25.jar)
set (HDF5_JAVA_LOGGING_SIMPLE_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.25.jar)
#-----------------------------------------------------------------------------
# parse the full version number from H5public.h and include in H5_VERS_INFO
......@@ -218,13 +218,13 @@ string (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z._]*)
#-----------------------------------------------------------------------------
file (READ ${HDF5_SOURCE_DIR}/config/lt_vers.am _lt_vers_am_contents)
string (REGEX REPLACE ".*LT_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$"
"\\1" H5_SOVERS_INTERFACE ${_lt_vers_am_contents})
"\\1" H5_LIB_SOVERS_INTERFACE ${_lt_vers_am_contents})
string (REGEX REPLACE ".*LT_VERS_REVISION[ \t]+=[ \t]+([0-9]*).*$"
"\\1" H5_SOVERS_MINOR ${_lt_vers_am_contents})
"\\1" H5_LIB_SOVERS_MINOR ${_lt_vers_am_contents})
string (REGEX REPLACE ".*LT_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
"\\1" H5_SOVERS_RELEASE ${_lt_vers_am_contents})
math (EXPR H5_SOVERS_MAJOR ${H5_SOVERS_INTERFACE}-${H5_SOVERS_RELEASE})
message (STATUS "SOVERSION: ${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
"\\1" H5_LIB_SOVERS_RELEASE ${_lt_vers_am_contents})
math (EXPR H5_LIB_SOVERS_MAJOR ${H5_LIB_SOVERS_INTERFACE}-${H5_LIB_SOVERS_RELEASE})
message (STATUS "SOVERSION: ${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
string (REGEX MATCH ".*LT_TOOLS_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_TOOLS_SOVERS_EXISTS ${_lt_vers_am_contents})
if (H5_TOOLS_SOVERS_EXISTS)
string (REGEX REPLACE ".*LT_TOOLS_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$"
......@@ -316,41 +316,56 @@ if (NOT "${H5_VERS_SUBRELEASE}" STREQUAL "")
else ()
set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
endif ()
set (HDF5_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_LIB_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_LIB_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
if (H5_TOOLS_SOVERS_EXISTS)
set (HDF5_TOOLS_PACKAGE_SOVERSION "${H5_TOOLS_SOVERS_MAJOR}.${H5_TOOLS_SOVERS_RELEASE}.${H5_TOOLS_SOVERS_MINOR}")
set (HDF5_TOOLS_PACKAGE_SOVERSION_MAJOR "${H5_TOOLS_SOVERS_MAJOR}")
else ()
set (HDF5_TOOLS_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_TOOLS_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_TOOLS_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_CXX_SOVERS_EXISTS)
set (HDF5_CXX_PACKAGE_SOVERSION "${H5_CXX_SOVERS_MAJOR}.${H5_CXX_SOVERS_RELEASE}.${H5_CXX_SOVERS_MINOR}")
set (HDF5_CXX_PACKAGE_SOVERSION_MAJOR "${H5_CXX_SOVERS_MAJOR}")
else ()
set (HDF5_CXX_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_CXX_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_CXX_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_F_SOVERS_EXISTS)
set (HDF5_F_PACKAGE_SOVERSION "${H5_F_SOVERS_MAJOR}.${H5_F_SOVERS_RELEASE}.${H5_F_SOVERS_MINOR}")
set (HDF5_F_PACKAGE_SOVERSION_MAJOR "${H5_F_SOVERS_MAJOR}")
else ()
set (HDF5_F_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_F_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_F_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_HL_SOVERS_EXISTS)
set (HDF5_HL_PACKAGE_SOVERSION "${H5_HL_SOVERS_MAJOR}.${H5_HL_SOVERS_RELEASE}.${H5_HL_SOVERS_MINOR}")
set (HDF5_HL_PACKAGE_SOVERSION_MAJOR "${H5_HL_SOVERS_MAJOR}")
else ()
set (HDF5_HL_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_HL_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_HL_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_HL_F_SOVERS_EXISTS)
set (HDF5_HL_CXX_PACKAGE_SOVERSION "${H5_HL_CXX_SOVERS_MAJOR}.${H5_HL_CXX_SOVERS_RELEASE}.${H5_HL_CXX_SOVERS_MINOR}")
set (HDF5_HL_CXX_PACKAGE_SOVERSION_MAJOR "${H5_HL_CXX_SOVERS_MAJOR}")
else ()
set (HDF5_HL_CXX_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_HL_CXX_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_HL_CXX_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_HL_F_SOVERS_EXISTS)
set (HDF5_HL_F_PACKAGE_SOVERSION "${H5_HL_F_SOVERS_MAJOR}.${H5_HL_F_SOVERS_RELEASE}.${H5_HL_F_SOVERS_MINOR}")
set (HDF5_HL_F_PACKAGE_SOVERSION_MAJOR "${H5_HL_F_SOVERS_MAJOR}")
else ()
set (HDF5_HL_F_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_HL_F_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_HL_F_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_JAVA_SOVERS_EXISTS)
set (HDF5_PACKAGE_SOVERSION "${H5_JAVA_SOVERS_MAJOR}.${H5_JAVA_SOVERS_RELEASE}.${H5_JAVA_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION "${H5_JAVA_SOVERS_MAJOR}.${H5_JAVA_SOVERS_RELEASE}.${H5_JAVA_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION_MAJOR "${H5_JAVA_SOVERS_MAJOR}")
else ()
set (HDF5_JAVA_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
set (HDF5_PACKAGE_STRING "${HDF5_PACKAGE_NAME} ${HDF5_PACKAGE_VERSION_STRING}")
set (HDF5_PACKAGE_TARNAME "${HDF5_PACKAGE}${HDF_PACKAGE_EXT}")
......@@ -415,7 +430,7 @@ set (CMAKE_POSITION_INDEPENDENT_CODE ON)
#-----------------------------------------------------------------------------
# Option to Build Static executables
#-----------------------------------------------------------------------------
option (BUILD_STATIC_EXECS "Build Static Executabless" OFF)
option (BUILD_STATIC_EXECS "Build Static Executables" OFF)
if (BUILD_STATIC_EXECS)
if (NOT WIN32)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -static")
......@@ -428,9 +443,14 @@ endif ()
#-----------------------------------------------------------------------------
option (HDF5_ENABLE_COVERAGE "Enable code coverage for Libraries and Programs" OFF)
if (HDF5_ENABLE_COVERAGE)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 -fprofile-arcs -ftest-coverage")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0 -fprofile-arcs -ftest-coverage")
set (LDFLAGS "${LDFLAGS} -fprofile-arcs -ftest-coverage")
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 --coverage -fprofile-arcs -ftest-coverage")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g --coverage -O0 -fprofile-arcs -ftest-coverage")
if (CMAKE_C_COMPILER_ID STREQUAL "GNU")
set (LDFLAGS "${LDFLAGS} -fprofile-arcs -ftest-coverage")
link_libraries (gcov)
else ()
set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --coverage")
endif ()
endif ()
#-----------------------------------------------------------------------------
......@@ -507,22 +527,12 @@ option (HDF5_BUILD_GENERATORS "Build Test Generators" OFF)
option (HDF5_ENABLE_TRACE "Enable API tracing capability" OFF)
mark_as_advanced (HDF5_ENABLE_TRACE)
if (${HDF_CFG_NAME} MATCHES "Debug")
add_definitions (-DDEBUG)
# Enable tracing of the API
if (HDF5_ENABLE_TRACE)
add_definitions (-DH5_DEBUG_API )
endif ()
# Enable instrumenting of the library's internal operations
option (HDF5_ENABLE_INSTRUMENT "Instrument The library" OFF)
if (HDF5_ENABLE_INSTRUMENT)
set (H5_HAVE_INSTRUMENTED_LIBRARY 1)
endif ()
mark_as_advanced (HDF5_ENABLE_INSTRUMENT)
else ()
add_definitions (-DNDEBUG)
if (HDF5_ENABLE_TRACE)
add_definitions (-DH5_DEBUG_API )
endif ()
endif ()
#-----------------------------------------------------------------------------
......@@ -539,11 +549,6 @@ endif ()
include (${HDF_RESOURCES_DIR}/HDFCompilerFlags.cmake)
#-----------------------------------------------------------------------------
# All libs/tests/examples need the main include directories
#-----------------------------------------------------------------------------
INCLUDE_DIRECTORIES (${HDF5_BINARY_DIR} ${HDF5_SRC_DIR} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
#-----------------------------------------------------------------------------
# Option to Enable MPI Parallel
#-----------------------------------------------------------------------------
......@@ -555,11 +560,31 @@ if (HDF5_ENABLE_PARALLEL)
set (H5_HAVE_PARALLEL 1)
# MPI checks, only do these if MPI_C_FOUND is true, otherwise they always fail
# and once set, they are cached as false and not regenerated
set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}" )
set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}")
set (CMAKE_REQUIRED_INCLUDES "${MPI_C_INCLUDE_DIRS}")
# Used by Fortran + MPI
CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Comm)
CHECK_SYMBOL_EXISTS (MPI_Info_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Info)
INCLUDE_DIRECTORIES (${MPI_C_INCLUDE_DIRS})
CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "mpi.h" H5_HAVE_MPI_MULTI_LANG_Comm)
CHECK_SYMBOL_EXISTS (MPI_Info_c2f "mpi.h" H5_HAVE_MPI_MULTI_LANG_Info)
# Used by Parallel Compression feature
set (PARALLEL_FILTERED_WRITES ON)
CHECK_SYMBOL_EXISTS (MPI_Mprobe "mpi.h" H5_HAVE_MPI_Mprobe)
CHECK_SYMBOL_EXISTS (MPI_Imrecv "mpi.h" H5_HAVE_MPI_Imrecv)
if (NOT H5_HAVE_MPI_Mprobe OR NOT H5_HAVE_MPI_Imrecv)
message (WARNING "The MPI_Mprobe and/or MPI_Imrecv functions could not be located.
Parallel writes of filtered data will be disabled.")
set (PARALLEL_FILTERED_WRITES OFF)
endif ()
# Used by big I/O feature
set (LARGE_PARALLEL_IO ON)
CHECK_SYMBOL_EXISTS (MPI_Get_elements_x "mpi.h" H5_HAVE_MPI_Get_elements_x)
CHECK_SYMBOL_EXISTS (MPI_Type_size_x "mpi.h" H5_HAVE_MPI_Type_size_x)
if (NOT H5_HAVE_MPI_Get_elements_x OR NOT H5_HAVE_MPI_Type_size_x)
message (WARNING "The MPI_Get_elements_x and/or MPI_Type_size_x functions could not be located.
Reading/Writing >2GB of data in a single parallel I/O operation will be disabled.")
set (LARGE_PARALLEL_IO OFF)
endif ()
else ()
message (STATUS "Parallel libraries not found")
endif ()
......@@ -594,6 +619,16 @@ if (HDF5_USE_18_API_DEFAULT)
set (DEFAULT_API_VERSION "v18")
endif ()
#-----------------------------------------------------------------------------
# Option to use 1.10.x API
#-----------------------------------------------------------------------------
option (HDF5_USE_110_API_DEFAULT "Use the HDF5 1.10.x API by default" ON)
set (H5_USE_110_API_DEFAULT 0)
if (HDF5_USE_110_API_DEFAULT)
set (H5_USE_110_API_DEFAULT 1)
set (DEFAULT_API_VERSION "v110")
endif ()
#-----------------------------------------------------------------------------
# Include user macros
#-----------------------------------------------------------------------------
......@@ -824,6 +859,9 @@ if (EXISTS "${HDF5_SOURCE_DIR}/c++" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/c++")
message (STATUS " **** Allowing unsupported Parallel and C++ options **** ")
endif ()
endif ()
include (${HDF_RESOURCES_EXT_DIR}/HDFUseCXX.cmake)
if (CMAKE_NO_STD_NAMESPACE)
set (H5_NO_STD 1)
endif ()
......@@ -842,7 +880,7 @@ endif ()
# being built then configure should fail due to bug HDFFV-889.
#-----------------------------------------------------------------------------
if (HDF5_BUILD_FORTRAN AND HDF5_BUILD_HL_LIB)
if (NOT FORTRAN_DEFAULT_REAL_NOT_DOUBLE)
if (NOT H5_FORTRAN_DEFAULT_REAL_NOT_DOUBLE)
message (FATAL_ERROR " **** Fortran high-level routines are not supported when the default REAL is DOUBLE PRECISION, use HDF5_BUILD_HL_LIB:BOOL=OFF **** ")
endif ()
endif ()
......
COPYING
View file @ ec619413
......@@ -3,7 +3,7 @@ HDF5 (Hierarchical Data Format 5) Software Library and Utilities
-----------------------------------------------------------------------------
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 2006, The HDF Group.
Copyright (c) 2006-2018, The HDF Group.
NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 1998-2006, The Board of Trustees of the University of Illinois.
......@@ -21,27 +21,16 @@ provided that the following conditions are met:
this list of conditions, and the following disclaimer in the documentation
and/or materials provided with the distribution.
3. In addition, redistributions of modified forms of the source or binary
code must carry prominent notices stating that the original code was
changed and the date of the change.
4. All publications or advertising materials mentioning features or use of
this software are asked, but not required, to acknowledge that it was
developed by The HDF Group and by the National Center for Supercomputing
Applications at the University of Illinois at Urbana-Champaign and
credit the contributors.
5. Neither the name of The HDF Group, the name of the University, nor the
3. Neither the name of The HDF Group, the name of the University, nor the
name of any Contributor may be used to endorse or promote products derived
from this software without specific prior written permission from
The HDF Group, the University, or the Contributor, respectively.
DISCLAIMER:
THIS SOFTWARE IS PROVIDED BY THE HDF GROUP AND THE CONTRIBUTORS
"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. In no
event shall The HDF Group or the Contributors be liable for any damages
suffered by the users arising out of the use of this software, even if
advised of the possibility of such damage.
"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. IN NO EVENT SHALL THE HDF GROUP OR THE CONTRIBUTORS BE LIABLE FOR ANY DAMAGES SUFFERED BY THE USERS ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
You are under no obligation whatsoever to provide any bug fixes, patches, or upgrades to the features, functionality or performance of the source code ("Enhancements") to anyone; however, if you choose to make your Enhancements available either publicly, or directly to The HDF Group, without imposing a separate written license agreement for such Enhancements, then you hereby grant the following license: a non-exclusive, royalty-free perpetual license to install, use, modify, prepare derivative works, incorporate into other computer software, distribute, and sublicense such enhancements or derivative works thereof, in binary and source code form.
-----------------------------------------------------------------------------
-----------------------------------------------------------------------------
......@@ -55,9 +44,7 @@ http://support.hdfgroup.org/ftp/HDF5/releases/COPYING_LBNL_HDF5.
-----------------------------------------------------------------------------
Contributors: National Center for Supercomputing Applications (NCSA) at
the University of Illinois, Fortner Software, Unidata Program Center (netCDF),
The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip),
and Digital Equipment Corporation (DEC).
the University of Illinois, Fortner Software, Unidata Program Center (netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip), and Digital Equipment Corporation (DEC).
-----------------------------------------------------------------------------
......@@ -98,8 +85,8 @@ and/or accompanying materials:
-----------------------------------------------------------------------------
HDF5 is available with the SZIP compression library but SZIP is not part
of HDF5 and has separate copyright and license terms. See “Szip Compression
in HDF Products” (https://support.hdfgroup.org/doc_resource/SZIP/) for further details.
of HDF5 and has separate copyright and license terms. See SZIP Compression
in HDF Products (www.hdfgroup.org/doc_resource/SZIP/) for further details.
-----------------------------------------------------------------------------
CTestConfig.cmake
View file @ ec619413
......@@ -19,12 +19,23 @@ set (CTEST_PROJECT_NAME "HDF5")
set (CTEST_NIGHTLY_START_TIME "18:00:00 CST")
set (CTEST_DROP_METHOD "http")
if (CDASH_LOCAL)
set (CTEST_DROP_SITE "cdash-internal.hdfgroup.org")
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5110")
if (CTEST_DROP_SITE_INIT)
set (CTEST_DROP_SITE "${CTEST_DROP_SITE_INIT}")
else ()
set (CTEST_DROP_SITE "cdash.hdfgroup.org")
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5")
if (CDASH_LOCAL)
set (CTEST_DROP_SITE "cdash-internal.hdfgroup.org")
else ()
set (CTEST_DROP_SITE "cdash.hdfgroup.org")
endif ()
endif ()
if (CTEST_DROP_LOCATION_INIT)
set (CTEST_DROP_LOCATION "${CTEST_DROP_LOCATION_INIT}")
else ()
if (CDASH_LOCAL)
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5110")
else ()
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5")
endif ()
endif ()
set (CTEST_DROP_SITE_CDASH TRUE)
......
MANIFEST
View file @ ec619413
......@@ -85,6 +85,7 @@
./bin/release
./bin/restore.sh
./bin/runtest _DO_NOT_DISTRIBUTE_
./bin/runbkgprog _DO_NOT_DISTRIBUTE_
./bin/snapshot
./bin/snapshot_version _DO_NOT_DISTRIBUTE_
./bin/switch_maint_mode _DO_NOT_DISTRIBUTE_
......@@ -234,6 +235,7 @@
./fortran/src/H5Zff.F90
./fortran/src/H5config_f.inc.cmake
./fortran/src/H5config_f.inc.in
./fortran/src/H5fort_type_defines.h.cmake
./fortran/src/H5fort_type_defines.h.in
./fortran/src/H5f90.h
./fortran/src/H5f90global.F90
......@@ -349,6 +351,8 @@
./c++/src/H5DataSpace.h
./c++/src/H5DataType.cpp
./c++/src/H5DataType.h
./c++/src/H5DaccProp.cpp
./c++/src/H5DaccProp.h
./c++/src/H5DcreatProp.cpp
./c++/src/H5DcreatProp.h
./c++/src/H5DxferProp.cpp
......@@ -394,7 +398,7 @@
./c++/src/H5VarLenType.h
./c++/src/Makefile.am
./c++/src/RM_stylesheet.css
./c++/src/C2Cppfunction_map.mht
./c++/src/C2Cppfunction_map.htm
./c++/src/cpp_doc_config
./c++/src/h5c++.in
./c++/src/footer.html
......@@ -520,6 +524,9 @@
./src/H5Ctest.c
./src/H5CS.c
./src/H5CSprivate.h
./src/H5CX.c
./src/H5CXprivate.h
./src/H5CXmodule.h
./src/H5D.c
./src/H5Dbtree.c
./src/H5Dbtree2.c
......@@ -748,6 +755,7 @@
./src/H5Ocont.c
./src/H5Ocopy.c
./src/H5Odbg.c
./src/H5Odeprec.c
./src/H5Odrvinfo.c
./src/H5Odtype.c
./src/H5Oefl.c
......@@ -936,6 +944,7 @@
./test/cross_read.c
./test/dangle.c
./test/deflate.h5
./test/direct_chunk.c
./test/dsets.c
./test/dt_arith.c
./test/dtypes.c
......@@ -1556,6 +1565,12 @@
./tools/test/h5stat/testfiles/h5stat_err1_links.ddl
./tools/test/h5stat/testfiles/h5stat_err1_numattrs.ddl
./tools/test/h5stat/testfiles/h5stat_err2_numattrs.ddl
./tools/test/h5stat/testfiles/h5stat_err_old_fill.h5
./tools/test/h5stat/testfiles/h5stat_err_old_fill.ddl
./tools/test/h5stat/testfiles/h5stat_err_old_layout.h5
./tools/test/h5stat/testfiles/h5stat_err_old_layout.ddl
./tools/test/h5stat/testfiles/h5stat_err_refcount.h5
./tools/test/h5stat/testfiles/h5stat_err_refcount.ddl
./tools/test/h5stat/testfiles/h5stat_filters.ddl
./tools/test/h5stat/testfiles/h5stat_filters-d.ddl
./tools/test/h5stat/testfiles/h5stat_filters-dT.ddl
......@@ -1780,6 +1795,8 @@
./tools/testfiles/tints4dims.h5
./tools/testfiles/tintsattrs.ddl
./tools/testfiles/tintsattrs.h5
./tools/testfiles/tintsnodata.ddl
./tools/testfiles/tintsnodata.h5
./tools/testfiles/tlarge_objname.ddl
./tools/testfiles/tlarge_objname.h5
./tools/testfiles/tldouble.h5
......@@ -2584,6 +2601,7 @@
./tools/test/perform/build_h5perf_alone.sh
./tools/test/perform/build_h5perf_serial_alone.sh
./tools/test/perform/chunk.c
./tools/test/perform/direct_write_perf.c
./tools/test/perform/gen_report.pl
./tools/test/perform/iopipe.c
./tools/test/perform/overhead.c
......@@ -2661,7 +2679,6 @@
./hl/test/COPYING
./hl/test/H5srcdir_str.h.in
./hl/test/Makefile.am
./hl/test/dectris_hl_perf.c
./hl/test/dsdata.txt
./hl/test/dslat.txt
./hl/test/dslon.txt
......@@ -2680,8 +2697,8 @@
./hl/test/test_ds_be.h5
./hl/test/test_ds_le.h5
./hl/test/test_dset_append.c
./hl/test/test_dset_opt.c
./hl/test/test_file_image.c
./hl/test/test_h5do_compat.c
./hl/test/test_image.c
./hl/test/test_ld.c
./hl/test/test_ld.h5
......@@ -3044,8 +3061,42 @@
./java/test/Makefile.am
./java/test/CMakeLists.txt
./java/test/junit.sh.in
./java/test/JUnit-interface.txt
./java/test/JUnit-interface.ert
./java/test/testfiles/JUnit-TestH5.txt
./java/test/testfiles/JUnit-TestH5A.txt
./java/test/testfiles/JUnit-TestH5Dparams.txt
./java/test/testfiles/JUnit-TestH5D.txt
./java/test/testfiles/JUnit-TestH5Dplist.txt
./java/test/testfiles/JUnit-TestH5E.txt
./java/test/testfiles/JUnit-TestH5Edefault.txt
./java/test/testfiles/JUnit-TestH5Eparams.txt
./java/test/testfiles/JUnit-TestH5Eregister.txt
./java/test/testfiles/JUnit-TestH5Fparams.txt
./java/test/testfiles/JUnit-TestH5Fbasic.txt
./java/test/testfiles/JUnit-TestH5F.txt
./java/test/testfiles/JUnit-TestH5Fswmr.txt
./java/test/testfiles/JUnit-TestH5Gbasic.txt
./java/test/testfiles/JUnit-TestH5G.txt
./java/test/testfiles/JUnit-TestH5Giterate.txt
./java/test/testfiles/JUnit-TestH5Lparams.txt
./java/test/testfiles/JUnit-TestH5Lbasic.txt
./java/test/testfiles/JUnit-TestH5Lcreate.txt
./java/test/testfiles/JUnit-TestH5Oparams.txt
./java/test/testfiles/JUnit-TestH5Obasic.txt
./java/test/testfiles/JUnit-TestH5Ocreate.txt
./java/test/testfiles/JUnit-TestH5Ocopy.txt
./java/test/testfiles/JUnit-TestH5P.txt
./java/test/testfiles/JUnit-TestH5PData.txt
./java/test/testfiles/JUnit-TestH5Pfapl.txt
./java/test/testfiles/JUnit-TestH5Plist.txt
./java/test/testfiles/JUnit-TestH5Pvirtual.txt
./java/test/testfiles/JUnit-TestH5PL.txt
./java/test/testfiles/JUnit-TestH5R.txt
./java/test/testfiles/JUnit-TestH5Sbasic.txt
./java/test/testfiles/JUnit-TestH5S.txt
./java/test/testfiles/JUnit-TestH5Tparams.txt
./java/test/testfiles/JUnit-TestH5Tbasic.txt
./java/test/testfiles/JUnit-TestH5T.txt
./java/test/testfiles/JUnit-TestH5Z.txt
./java/test/h5ex_g_iterate.orig
./java/test/TestH5.java
./java/test/TestH5A.java
......@@ -3054,6 +3105,7 @@
./java/test/TestH5Dplist.java
./java/test/TestH5E.java
./java/test/TestH5Edefault.java
./java/test/TestH5Eparams.java
./java/test/TestH5Eregister.java
./java/test/TestH5Fparams.java
./java/test/TestH5Fbasic.java
......@@ -3087,9 +3139,9 @@
./java/lib/hamcrest-core.jar
./java/lib/junit.jar
./java/lib/simplelogger.properties
./java/lib/slf4j-api-1.7.5.jar
./java/lib/ext/slf4j-nop-1.7.5.jar
./java/lib/ext/slf4j-simple-1.7.5.jar
./java/lib/slf4j-api-1.7.25.jar
./java/lib/ext/slf4j-nop-1.7.25.jar
./java/lib/ext/slf4j-simple-1.7.25.jar
# CMake-specific Files
./config/cmake/cacheinit.cmake
......@@ -3134,6 +3186,7 @@
./config/cmake_ext_mod/HDFLibMacros.cmake
./config/cmake_ext_mod/HDFMacros.cmake
./config/cmake_ext_mod/HDFTests.c
./config/cmake_ext_mod/HDFUseCXX.cmake
./config/cmake_ext_mod/HDFUseFortran.cmake
./config/cmake_ext_mod/NSIS.InstallOptions.ini.in
./config/cmake_ext_mod/NSIS.template.in
......@@ -3198,6 +3251,8 @@
./test/CMakeLists.txt
./test/CMakeTests.cmake
./test/CMakeVFDTests.cmake
./test/flushrefreshTest.cmake
./test/ShellTests.cmake
./testpar/CMakeLists.txt
./testpar/CMakeTests.cmake
./tools/CMakeLists.txt
......
Makefile.in
View file @ ec619413
......@@ -376,6 +376,7 @@ JAVA_PATH_NAME = @JAVA_PATH_NAME@
JAVA_VERSION = @JAVA_VERSION@
JNIFLAGS = @JNIFLAGS@
JUNIT = @JUNIT@
LARGE_PARALLEL_IO = @LARGE_PARALLEL_IO@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
......@@ -423,6 +424,7 @@ PAC_FORTRAN_NATIVE_REAL_KIND = @PAC_FORTRAN_NATIVE_REAL_KIND@
PAC_FORTRAN_NATIVE_REAL_SIZEOF = @PAC_FORTRAN_NATIVE_REAL_SIZEOF@
PAC_FORTRAN_NUM_INTEGER_KINDS = @PAC_FORTRAN_NUM_INTEGER_KINDS@
PARALLEL = @PARALLEL@
PARALLEL_FILTERED_WRITES = @PARALLEL_FILTERED_WRITES@
PATH_SEPARATOR = @PATH_SEPARATOR@
PROFILING = @PROFILING@
RANLIB = @RANLIB@
......
README.txt
View file @ ec619413
HDF5 version 1.10.2 released on 2018-03-29
HDF5 version 1.10.3 released on 2018-08-21
------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
......
autogen.sh
View file @ ec619413
......@@ -12,7 +12,7 @@
#
# A script to reconfigure autotools for HDF5, and to recreate other
# generated files specifc to HDF5.
# generated files specific to HDF5.
#
# IMPORTANT OS X NOTE
#
......
bin/cmakehdf5
View file @ ec619413
......@@ -46,8 +46,9 @@ cacheinit=$srcdir/config/cmake/cacheinit.cmake
build_cpp_lib=-DHDF5_BUILD_CPP_LIB:BOOL=OFF # C++ interface default off
build_fortran=-DHDF5_BUILD_FORTRAN:BOOL=OFF # Fortran interface default off
build_hl_lib=-DHDF5_BUILD_HL_LIB:BOOL=ON # High Level interface default on
build_threadsafe=-DHDF5_ENABLE_THREADSAFE:BOOL=OFF # Threadsafe feature default off
build_threadsafe=-DHDF5_ENABLE_THREADSAFE:BOOL=OFF # Threadsafe feature default off
build_testing=-DBUILD_TESTING:BOOL=ON # Build tests default on
build_test_shell=-DTEST_SHELL_SCRIPTS:BOOL=ON # Run shell script tests default on
build_tools=-DHDF5_BUILD_TOOLS:BOOL=ON # Build tools default on
with_zlib=-DHDF5_ENABLE_Z_LIB_SUPPORT=ON # enable zlib filter default on
with_szlib=-DHDF5_ENABLE_SZIP_SUPPORT=OFF # enables szip filter default off
......@@ -256,6 +257,12 @@ while [ $# -gt 0 ]; do
--disable-testing)
build_testing=-DBUILD_TESTING:BOOL=OFF
;;
--enable-shell-testing)
build_test_shell=-DTEST_SHELL_SCRIPTS:BOOL=ON
;;
--disable-shell-testing)
build_test_shell=-DTEST_SHELL_SCRIPTS:BOOL=OFF
;;
--with-zlib)
with_zlib=-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON
;;
......@@ -342,6 +349,7 @@ STEP "Configure..." \
$build_threadsafe \
$shared_lib \
$build_testing \
$build_test_shell \
$build_tools \
$with_zlib \
$with_szlib \
......
bin/make_vers
View file @ ec619413
......@@ -7,8 +7,8 @@ require 5.003;
# is added (like support for 1.4, etc), the min_sup_idx parameter will
# need to be decremented. - QAK)
# Max. library "index" (0 = v1.0, 1 = 1.2, etc)
$max_idx = 5;
# Max. library "index" (0 = v1.0, 1 = 1.2, 2 = 1.4, 3 = 1.6, 4 = 1.8, 5 = 1.10, 6 = 1.12, etc)
$max_idx = 6;
# Min. supported previous library version "index" (0 = v1.0, 1 = 1.2, etc)
$min_sup_idx = 3;
......@@ -478,7 +478,7 @@ for $file (@ARGV) {
}
}
close SOURCE;
# Create header files
print "Generating '", $prefix, "H5version.h'\n";
create_public($prefix);
......
bin/release
View file @ ec619413
......@@ -188,46 +188,47 @@ tar2zip()
# Returns 0 if successful; 1 otherwise
#
# need function to create another temporary directory, extract the
# $tmpdir/$HDF5_VERS.tar into it, add (create) build-unix.sh,
# CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz and ZLib.tar.gz,
# and then tar.gz it.
# $tmpdir/$HDF5_VERS.tar into it, create build-VS*.bat files,
# add CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz
# ZLib.tar.gz, HDF5 examples, and then zip it.
tar2cmakezip()
{
if [ $# -ne 3 ]; then
echo "usage: tar2cmakezip <tarfilename> <tgzfilename>"
echo "usage: tar2cmakezip <tarfilename> <zipfilename>"
return 1
fi
cmziptmpdir=/tmp/cmziptmpdir$$
mkdir -p $cmziptmpdir
cmziptmpsubdir=$cmziptmpdir/CMake-$HDF5_VERS
mkdir -p $cmziptmpsubdir
version=$1
tarfile=$2
zipfile=$3
# step 1: untar tarball in cmgztmpdir
(cd $cmziptmpdir; tar xf -) < $tarfile
(cd $cmziptmpsubdir; tar xf -) < $tarfile
# sanity check
if [ ! -d $cmziptmpdir/$version ]; then
echo "untar did not create $cmziptmpdir/$version source dir"
if [ ! -d $cmziptmpsubdir/$version ]; then
echo "untar did not create $cmziptmpsubdir/$version source dir"
# cleanup
rm -rf $cmziptmpdir
return 1
fi
# step 2: add batch files for building CMake on windows
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5_1_10/build-VS2013-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5_1_10/build-VS2013-64.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5_1_10/build-VS2015-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5_1_10/build-VS2015-64.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5_1_10/build-VS2017-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5_1_10/build-VS2017-64.bat $cmziptmpdir
# step 2: add batch file for building CMake on window
(cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2013 -C Release -V -O hdf5.log" > build-VS2013-32.bat; chmod 755 build-VS2013-32.bat)
(cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201364 -C Release -V -O hdf5.log" > build-VS2013-64.bat; chmod 755 build-VS2013-64.bat)
(cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2015 -C Release -V -O hdf5.log" > build-VS2015-32.bat; chmod 755 build-VS2015-32.bat)
(cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201564 -C Release -V -O hdf5.log" > build-VS2015-64.bat; chmod 755 build-VS2015-64.bat)
(cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2017 -C Release -V -O hdf5.log" > build-VS2017-32.bat; chmod 755 build-VS2017-32.bat)
(cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -V -O hdf5.log" > build-VS2017-64.bat; chmod 755 build-VS2017-64.bat)
# step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.10.7-Source.tar.gz $cmziptmpdir
cp $cmziptmpdir/$version/config/cmake/scripts/CTestScript.cmake $cmziptmpdir
cp $cmziptmpdir/$version/config/cmake/scripts/HDF5config.cmake $cmziptmpdir
cp $cmziptmpdir/$version/config/cmake/scripts/HDF5options.cmake $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmziptmpsubdir
cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmziptmpsubdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.10.8-Source.tar.gz $cmziptmpsubdir
cp $cmziptmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmziptmpsubdir
cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmziptmpsubdir
cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmziptmpsubdir
# step 4: convert text files
# There maybe a simpler way to do this.
......@@ -235,16 +236,13 @@ tar2cmakezip()
# -k Keep the date stamp
# -q quiet mode
# grep redirect output to /dev/null because -q or -s are not portable.
find $cmziptmpdir/$version | \
find $cmziptmpsubdir/$version | \
while read inf; do \
if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
unix2dos -q -k $inf; \
fi\
done
mkdir $cmziptmpdir/CMake-$HDF5_VERS
mv $cmziptmpdir/* $cmziptmpdir/CMake-$HDF5_VERS
# step 3: make zipball
# -9 maximum compression
# -y Store symbolic links as such in the zip archive
......@@ -289,9 +287,9 @@ tar2cmakezip()
# Returns 0 if successful; 1 otherwise
#
# need function to create another temporary directory, extract the
# $tmpdir/$HDF5_VERS.tar into it, add (create) build-unix.sh,
# CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz and ZLib.tar.gz,
# and then tar.gz it.
# $tmpdir/$HDF5_VERS.tar into it, create build-unix.sh,
# add CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz
# ZLib.tar.gz, HDF5 examples, and then tar.gz it.
tar2cmaketgz()
{
if [ $# -ne 3 ]; then
......@@ -299,16 +297,17 @@ tar2cmaketgz()
return 1
fi
cmgztmpdir=/tmp/cmgztmpdir$$
mkdir -p $cmgztmpdir
cmgztmpsubdir=$cmgztmpdir/CMake-$HDF5_VERS
mkdir -p $cmgztmpsubdir
version=$1
tarfile=$2
tgzfile=$3
# step 1: untar tarball in cmgztmpdir
(cd $cmgztmpdir; tar xf -) < $tarfile
(cd $cmgztmpsubdir; tar xf -) < $tarfile
# sanity check
if [ ! -d $cmgztmpdir/$version ]; then
echo "untar did not create $cmgztmpdir/$version source dir"
if [ ! -d $cmgztmpsubdir/$version ]; then
echo "untar did not create $cmgztmpsubdir/$version source dir"
# cleanup
rm -rf $cmgztmpdir
return 1
......@@ -316,17 +315,15 @@ tar2cmaketgz()
# step 2: add build-unix.sh script
(cd $cmgztmpdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log" > build-unix.sh; chmod 755 build-unix.sh)
(cd $cmgztmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log" > build-unix.sh; chmod 755 build-unix.sh)
# step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmgztmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.10.7-Source.tar.gz $cmgztmpdir
cp $cmgztmpdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpdir
cp $cmgztmpdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpdir
cp $cmgztmpdir/$version/config/cmake/scripts/HDF5options.cmake $cmgztmpdir
mkdir $cmgztmpdir/CMake-$HDF5_VERS
mv $cmgztmpdir/* $cmgztmpdir/CMake-$HDF5_VERS
cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmgztmpsubdir
cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.10.8-Source.tar.gz $cmgztmpsubdir
cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmgztmpsubdir
tar czf $DEST/CMake-$HDF5_VERS.tar.gz -C $cmgztmpdir . || exit 1
# cleanup
......
bin/runbkgprog 0 → 100644
View file @ ec619413
#!/usr/bin/perl -w
require 5.003;
$indent=4;
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Run program in background
#
use warnings;
use strict;
use Carp;
use Time::HiRes;
use POSIX 'setsid';
my $child_pid;
my $child_proc;
my $cmd = $ARGV[0];
my $debug = 1;
print "\nStart child process\n";
start_child();
print "\nStarted child process\n";
sub start_child {
die "cannot execute cmd: $cmd" unless -x $cmd;
if ($^O eq 'MSWin32') { # Windows
require Win32::Process;
Win32::Process::Create($child_proc, $cmd, $cmd, 0, 0, ".") || confess "Could not spawn child: $!";
$child_pid = $child_proc->GetProcessID();
}
else { # Unix
$SIG{CHLD} = 'IGNORE';
$child_pid = fork();
unless (defined $child_pid) {
confess "Could not spawn child (Unix): $!";
}
if ($child_pid == 0) { # child
unless ($debug) {
open STDIN, "<", "/dev/null" or die "Can't read /dev/null: $!";
open STDOUT, ">", "/dev/null" or die "Can't write /dev/null: $!";
}
setsid or warn "setsid cannot start a new session: $!";
unless ($debug) {
open STDERR, '>&STDOUT' or die "Can't dup stdout: $!";
}
local $| = 1;
unless (exec($cmd)) {
confess "Could not start child: $cmd: $!";
CORE::exit(0);
}
}
# parent
$SIG{CHLD} = 'DEFAULT';
}
# catch early child exit, e.g. if program path is incorrect
sleep(1.0);
POSIX::waitpid(-1, POSIX::WNOHANG()); # clean up any defunct child process
if (kill(0,$child_pid)) {
print "\nStarted child process id $child_pid\n";
}
else {
warn "Child process exited quickly: $cmd: process $child_pid";
}
}
sub stop_child
{
if ($^O eq 'MSWin32') { # Windows
Win32::Process::KillProcess($child_pid,0);
}
else { # Unix
kill 9, $child_pid || warn "could not kill process $child_pid: $!";
}
print "Stopped child process id $child_pid\n";
}
c++/CMakeLists.txt
View file @ ec619413
cmake_minimum_required (VERSION 3.10)
PROJECT (HDF5_CPP)
#-----------------------------------------------------------------------------
# Apply Definitions to compiler in this directory and below
#-----------------------------------------------------------------------------
add_definitions (${HDF_EXTRA_C_FLAGS})
#-----------------------------------------------------------------------------
# Generate configure file
#-----------------------------------------------------------------------------
configure_file (${HDF_RESOURCES_DIR}/H5cxx_config.h.in
${HDF5_BINARY_DIR}/H5cxx_pubconf.h
)
#-----------------------------------------------------------------------------
# Setup Include directories
#-----------------------------------------------------------------------------
INCLUDE_DIRECTORIES (${HDF5_CPP_SOURCE_DIR}/src)
INCLUDE_DIRECTORIES (${HDF5_BINARY_DIR})
#-----------------------------------------------------------------------------
# Parallel/MPI, prevent spurious cpp/cxx warnings
#-----------------------------------------------------------------------------
if (H5_HAVE_PARALLEL)
add_definitions ("-DMPICH_SKIP_MPICXX")
add_definitions ("-DMPICH_IGNORE_CXX_SEEK")
endif ()
project (HDF5_CPP CXX)
add_subdirectory (src)
......
c++/Makefile.in
View file @ ec619413
......@@ -537,6 +537,7 @@ JAVA_PATH_NAME = @JAVA_PATH_NAME@
JAVA_VERSION = @JAVA_VERSION@
JNIFLAGS = @JNIFLAGS@
JUNIT = @JUNIT@
LARGE_PARALLEL_IO = @LARGE_PARALLEL_IO@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
......@@ -584,6 +585,7 @@ PAC_FORTRAN_NATIVE_REAL_KIND = @PAC_FORTRAN_NATIVE_REAL_KIND@
PAC_FORTRAN_NATIVE_REAL_SIZEOF = @PAC_FORTRAN_NATIVE_REAL_SIZEOF@
PAC_FORTRAN_NUM_INTEGER_KINDS = @PAC_FORTRAN_NUM_INTEGER_KINDS@
PARALLEL = @PARALLEL@
PARALLEL_FILTERED_WRITES = @PARALLEL_FILTERED_WRITES@
PATH_SEPARATOR = @PATH_SEPARATOR@
PROFILING = @PROFILING@
RANLIB = @RANLIB@
......
c++/examples/CMakeLists.txt
View file @ ec619413
cmake_minimum_required (VERSION 3.10)
PROJECT (HDF5_CPP_EXAMPLES)
project (HDF5_CPP_EXAMPLES CXX)
# --------------------------------------------------------------------
# Notes: When creating examples they should be prefixed
......@@ -34,15 +34,17 @@ set (tutr_examples
foreach (example ${examples})
add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
TARGET_C_PROPERTIES (cpp_ex_${example} STATIC " " " ")
target_link_libraries (cpp_ex_${example} ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
endforeach ()
foreach (example ${tutr_examples})
add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
TARGET_C_PROPERTIES (cpp_ex_${example} STATIC " " " ")
target_link_libraries (cpp_ex_${example} ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
target_include_directories(cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
endforeach ()
......
c++/examples/Makefile.in
View file @ ec619413
......@@ -485,6 +485,7 @@ JAVA_PATH_NAME = @JAVA_PATH_NAME@
JAVA_VERSION = @JAVA_VERSION@
JNIFLAGS = @JNIFLAGS@
JUNIT = @JUNIT@
LARGE_PARALLEL_IO = @LARGE_PARALLEL_IO@
LD = @LD@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
......@@ -532,6 +533,7 @@ PAC_FORTRAN_NATIVE_REAL_KIND = @PAC_FORTRAN_NATIVE_REAL_KIND@
PAC_FORTRAN_NATIVE_REAL_SIZEOF = @PAC_FORTRAN_NATIVE_REAL_SIZEOF@
PAC_FORTRAN_NUM_INTEGER_KINDS = @PAC_FORTRAN_NUM_INTEGER_KINDS@
PARALLEL = @PARALLEL@
PARALLEL_FILTERED_WRITES = @PARALLEL_FILTERED_WRITES@
PATH_SEPARATOR = @PATH_SEPARATOR@
PROFILING = @PROFILING@
RANLIB = @RANLIB@
......
c++/examples/testh5c++.sh.in
View file @ ec619413
......@@ -56,7 +56,7 @@ applib=libapp${H5TOOL}.a
# short hands
# Caution: if some *.h5 files must be cleaned here, list them by names.
# Don't use the wildcard form of *.h5 as it will wipe out even *.h5 generated
# by otehr test programs. This will cause a racing condition error when
# by other test programs. This will cause a racing condition error when
# parallel make (e.g., gmake -j 4) is used.
temp_SRC="$hdf5main $appmain $prog1 $prog2"
temp_OBJ=`echo $temp_SRC | sed -e "s/\.${suffix}/.o/g"`
......
c++/src/CMakeLists.txt
View file @ ec619413
cmake_minimum_required (VERSION 3.10)
PROJECT (HDF5_CPP_SRC)
project (HDF5_CPP_SRC CXX)
#-----------------------------------------------------------------------------
# Generate configure file
......@@ -21,6 +21,7 @@ set (CPP_SOURCES
${HDF5_CPP_SRC_SOURCE_DIR}/H5DataSet.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5DataSpace.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5DataType.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5DaccProp.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5DcreatProp.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5DxferProp.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5EnumType.cpp
......@@ -58,6 +59,7 @@ set (CPP_HDRS
${HDF5_CPP_SRC_SOURCE_DIR}/H5DataSet.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5DataSpace.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5DataType.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5DaccProp.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5DcreatProp.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5DxferProp.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5EnumType.h
......@@ -83,28 +85,35 @@ set (CPP_HDRS
)
add_library (${HDF5_CPP_LIB_TARGET} STATIC ${CPP_SOURCES} ${CPP_HDRS})
TARGET_C_PROPERTIES (${HDF5_CPP_LIB_TARGET} STATIC " " " ")
target_include_directories(${HDF5_CPP_LIB_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
target_compile_definitions(${HDF5_CPP_LIB_TARGET}
PRIVATE $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:MPICH_SKIP_MPICXX;MPICH_IGNORE_CXX_SEEK># Parallel/MPI, prevent spurious cpp/cxx warnings
)
TARGET_C_PROPERTIES (${HDF5_CPP_LIB_TARGET} STATIC)
target_link_libraries (${HDF5_CPP_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_CPP_LIB_TARGET}")
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIB_TARGET} ${HDF5_CPP_LIB_NAME} STATIC)
set_target_properties (${HDF5_CPP_LIB_TARGET} PROPERTIES
FOLDER libraries/cpp
INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIB_TARGET} ${HDF5_CPP_LIB_NAME} STATIC 0)
set_target_properties (${HDF5_CPP_LIB_TARGET} PROPERTIES FOLDER libraries/cpp)
set (install_targets ${HDF5_CPP_LIB_TARGET})
if (BUILD_SHARED_LIBS)
add_library (${HDF5_CPP_LIBSH_TARGET} SHARED ${CPP_SOURCES} ${CPP_HDRS})
TARGET_C_PROPERTIES (${HDF5_CPP_LIBSH_TARGET} SHARED " " " ")
target_include_directories(${HDF5_CPP_LIBSH_TARGET}
PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
INTERFACE "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
)
target_compile_definitions(${HDF5_CPP_LIBSH_TARGET}
PUBLIC "H5_BUILT_AS_DYNAMIC_LIB"
PRIVATE $<$<BOOL:${HDF5_ENABLE_PARALLEL}>:MPICH_SKIP_MPICXX;MPICH_IGNORE_CXX_SEEK># Parallel/MPI, prevent spurious cpp/cxx warnings
)
TARGET_C_PROPERTIES (${HDF5_CPP_LIBSH_TARGET} SHARED)
target_link_libraries (${HDF5_CPP_LIBSH_TARGET} PUBLIC ${HDF5_LIBSH_TARGET})
set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_CPP_LIBSH_TARGET}")
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIBSH_TARGET} ${HDF5_CPP_LIB_NAME} SHARED ${HDF5_CXX_PACKAGE_SOVERSION})
set_target_properties (${HDF5_CPP_LIBSH_TARGET} PROPERTIES
FOLDER libraries/cpp
COMPILE_DEFINITIONS "H5_BUILT_AS_DYNAMIC_LIB"
INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
INTERFACE_COMPILE_DEFINITIONS H5_BUILT_AS_DYNAMIC_LIB=1
)
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIBSH_TARGET} ${HDF5_CPP_LIB_NAME} SHARED "CXX")
set_target_properties (${HDF5_CPP_LIBSH_TARGET} PROPERTIES FOLDER libraries/cpp)
set (install_targets ${install_targets} ${HDF5_CPP_LIBSH_TARGET})
endif ()
......
c++/src/H5AbstractDs.cpp
View file @ ec619413
......@@ -24,6 +24,7 @@
#include "H5DxferProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5DaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
#include "H5DataSpace.h"
......