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CMakeFilters.cmake
View file @ a6bd2aa2
......@@ -27,7 +27,15 @@ if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MAT
set (TGZPATH ${HDF5_SOURCE_DIR})
endif ()
set (ZLIB_URL ${TGZPATH}/${ZLIB_TGZ_NAME})
if (NOT EXISTS "${ZLIB_URL}")
set (HDF5_ENABLE_Z_LIB_SUPPORT OFF CACHE BOOL "" FORCE)
message (STATUS "Filter ZLIB file ${ZLIB_URL} not found")
endif ()
set (SZIP_URL ${TGZPATH}/${SZIP_TGZ_NAME})
if (NOT EXISTS "${SZIP_URL}")
set (HDF5_ENABLE_SZIP_SUPPORT OFF CACHE BOOL "" FORCE)
message (STATUS "Filter SZIP file ${SZIP_URL} not found")
endif ()
else ()
set (ZLIB_USE_EXTERNAL 0)
set (SZIP_USE_EXTERNAL 0)
......
CMakeInstallation.cmake
View file @ a6bd2aa2
......@@ -125,7 +125,7 @@ else ()
endif ()
configure_file (
${HDF_RESOURCES_DIR}/libhdf5.settings.cmake.in
${HDF5_BINARY_DIR}/libhdf5.settings @ONLY
${HDF5_BINARY_DIR}/libhdf5.settings ESCAPE_QUOTES @ONLY
)
install (
FILES ${HDF5_BINARY_DIR}/libhdf5.settings
......@@ -134,7 +134,7 @@ install (
)
#-----------------------------------------------------------------------------
# Configure the HDF518_Examples.cmake file and the examples
# Configure the HDF5_Examples.cmake file and the examples
#-----------------------------------------------------------------------------
option (HDF5_PACK_EXAMPLES "Package the HDF5 Library Examples Compressed File" OFF)
if (HDF5_PACK_EXAMPLES)
......
CMakeLists.txt
View file @ a6bd2aa2
......@@ -481,6 +481,15 @@ if (HDF5_MEMORY_ALLOC_SANITY_CHECK)
set (H5_MEMORY_ALLOC_SANITY_CHECK 1)
endif ()
#-----------------------------------------------------------------------------
# Option to enable/disable using pread/pwrite for VFDs
#-----------------------------------------------------------------------------
option (HDF5_ENABLE_PREADWRITE "Use pread/pwrite in sec2/log/core VFDs in place of read/write (when available)" ON)
mark_as_advanced (HDF5_ENABLE_PREADWRITE)
if (HDF5_ENABLE_PREADWRITE AND H5_HAVE_PREAD AND H5_HAVE_PWRITE)
set (H5_HAVE_PREADWRITE 1)
endif ()
#-----------------------------------------------------------------------------
# Option to use deprecated public API symbols
#-----------------------------------------------------------------------------
......@@ -739,6 +748,11 @@ if (BUILD_TESTING)
"Timeout in seconds for each test (default 1200=20minutes)"
)
# Generate a list of timeouts based on DART_TESTING_TIMEOUT
math (EXPR CTEST_SHORT_TIMEOUT "${DART_TESTING_TIMEOUT} / 2")
math (EXPR CTEST_LONG_TIMEOUT "${DART_TESTING_TIMEOUT} * 2")
math (EXPR CTEST_VERY_LONG_TIMEOUT "${DART_TESTING_TIMEOUT} * 3")
option (HDF5_TEST_VFD "Execute tests with different VFDs" OFF)
mark_as_advanced (HDF5_TEST_VFD)
if (HDF5_TEST_VFD)
......@@ -809,9 +823,6 @@ set (H5_FC_FUNC_ "H5_FC_FUNC_(name,NAME) name ## _")
if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/fortran")
option (HDF5_BUILD_FORTRAN "Build FORTRAN support" OFF)
if (HDF5_BUILD_FORTRAN)
option (HDF5_ENABLE_F2003 "Enable FORTRAN 2003 Standard" ON)
include (${HDF_RESOURCES_EXT_DIR}/HDFUseFortran.cmake)
message (STATUS "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}")
......@@ -824,10 +835,8 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
include (${HDF_RESOURCES_DIR}/HDF5UseFortran.cmake)
set (LINK_Fortran_LIBS ${LINK_LIBS})
if (HDF5_ENABLE_F2003)
if (NOT FORTRAN_HAVE_ISO_C_BINDING)
set (HDF5_ENABLE_F2003 OFF)
endif ()
if (NOT H5_FORTRAN_HAVE_ISO_C_BINDING)
message (FATAL_ERROR " **** Fortran compiler lacks required Fortran 2003 features; unsupported Fortran 2003 compiler, disable HDF5_BUILD_FORTRAN **** ")
endif ()
# Parallel IO usage requires MPI to be Linked and Included
......@@ -903,4 +912,10 @@ endif ()
#-----------------------------------------------------------------------------
configure_file (${HDF_RESOURCES_DIR}/H5pubconf.h.in ${HDF5_BINARY_DIR}/H5pubconf.h @ONLY)
#-----------------------------------------------------------------------------
# Options for use by cross compiling and toolchains
#-----------------------------------------------------------------------------
option (HDF5_USE_PREGEN "Use pre-generated Files" OFF)
option (HDF5_BATCH_H5DETECT "Use a batch command for running h5detect" OFF)
include (CMakeInstallation.cmake)
CTestConfig.cmake
View file @ a6bd2aa2
......@@ -45,9 +45,9 @@ set (VALGRIND_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=
set (CTEST_MEMORYCHECK_COMMAND "/usr/bin/valgrind")
set (CTEST_MEMORYCHECK_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=yes --num-callers=50 --show-reachable=yes --track-origins=yes --malloc-fill=0xff --free-fill=0xfe")
set (CTEST_TEST_TIMEOUT 600 CACHE STRING
set (CTEST_TEST_TIMEOUT 1200 CACHE STRING
"Maximum time allowed before CTest will kill the test.")
set (DART_TESTING_TIMEOUT 600 CACHE STRING
set (DART_TESTING_TIMEOUT 1200 CACHE STRING
"Maximum time allowed before CTest will kill the test." FORCE)
SET(CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING
......
MANIFEST
View file @ a6bd2aa2
......@@ -92,6 +92,20 @@
./bin/timekeeper _DO_NOT_DISTRIBUTE_
./bin/trace
./bin/yodconfigure
./bin/batch/cori_ctestP.sl.in.cmake
./bin/batch/cori_ctestS.sl.in.cmake
./bin/batch/cori_knl_ctestP.sl.in.cmake
./bin/batch/cori_knl_ctestS.sl.in.cmake
./bin/batch/ctestP.lsf.in.cmake
./bin/batch/ctestP.sl.in.cmake
./bin/batch/ctestS.lsf.in.cmake
./bin/batch/ctestS.sl.in.cmake
./bin/batch/knl_ctestP.sl.in.cmake
./bin/batch/knl_ctestS.sl.in.cmake
./bin/batch/knl_H5detect.sl.in.cmake
./bin/batch/ray_ctestP.lsf.in.cmake
./bin/batch/ray_ctestS.lsf.in.cmake
./bin/batch/raybsub
./bin/pkgscrpts/h5rmflags _DO_NOT_DISTRIBUTE_
./bin/pkgscrpts/makeHDF5BinaryTarfiles.pl _DO_NOT_DISTRIBUTE_
./bin/pkgscrpts/makeInternalREADME.pl _DO_NOT_DISTRIBUTE_
......@@ -448,6 +462,8 @@
./release_docs/INSTALL_Warnings.txt
./release_docs/INSTALL_Windows.txt
./release_docs/RELEASE.txt
./release_docs/README_HDF5_CMake
./release_docs/README_HPC
./release_docs/USING_HDF5_CMake.txt
./release_docs/USING_HDF5_VS.txt
......@@ -482,7 +498,6 @@
./src/H5Apublic.h
./src/H5AC.c
./src/H5ACdbg.c
./src/H5AClog.c
./src/H5ACmodule.h
./src/H5ACmpio.c
./src/H5ACpkg.h
......@@ -495,7 +510,6 @@
./src/H5Bmodule.h
./src/H5Bpkg.h
./src/H5Bprivate.h
./src/H5Bpublic.h
./src/H5B2.c
./src/H5B2cache.c
./src/H5B2dbg.c
......@@ -506,7 +520,6 @@
./src/H5B2module.h
./src/H5B2pkg.h
./src/H5B2private.h
./src/H5B2public.h
./src/H5B2stat.c
./src/H5B2test.c
./src/H5C.c
......@@ -514,6 +527,9 @@
./src/H5Cepoch.c
./src/H5Cimage.c
./src/H5Clog.c
./src/H5Clog.h
./src/H5Clog_json.c
./src/H5Clog_trace.c
./src/H5Cmodule.h
./src/H5Cmpio.c
./src/H5Cpkg.h
......@@ -650,7 +666,6 @@
./src/H5FSmodule.h
./src/H5FSpkg.h
./src/H5FSprivate.h
./src/H5FSpublic.h
./src/H5FSsection.c
./src/H5FSstat.c
./src/H5FStest.c
......@@ -690,7 +705,6 @@
./src/H5HFmodule.h
./src/H5HFpkg.h
./src/H5HFprivate.h
./src/H5HFpublic.h
./src/H5HFsection.c
./src/H5HFspace.c
./src/H5HFstat.c
......@@ -702,7 +716,6 @@
./src/H5HGmodule.h
./src/H5HGpkg.h
./src/H5HGprivate.h
./src/H5HGpublic.h
./src/H5HGquery.c
./src/H5HL.c
./src/H5HLcache.c
......@@ -713,7 +726,6 @@
./src/H5HLpkg.h
./src/H5HLprfx.c
./src/H5HLprivate.h
./src/H5HLpublic.h
./src/H5HP.c
./src/H5HPprivate.h
./src/H5I.c
......@@ -945,6 +957,7 @@
./test/cross_read.c
./test/dangle.c
./test/deflate.h5
./test/del_many_dense_attrs.c
./test/direct_chunk.c
./test/dsets.c
./test/dt_arith.c
......@@ -1032,6 +1045,7 @@
./test/le_extlink2.h5
./test/lheap.c
./test/links.c
./test/corrupted_name_len.h5
./test/mergemsg.h5
./test/mf.c
./test/mount.c
......@@ -1076,10 +1090,10 @@
./test/tcheck_version.c
./test/tconfig.c
./test/tcoords.c
./test/testabort_fail.sh.in
./test/testcheck_version.sh.in
./test/testerror.sh.in
./test/testlinks_env.sh.in
./test/test_filenotclosed.sh.in
./test/test_filter_plugin.sh.in
./test/testflushrefresh.sh.in
./test/testframe.c
......@@ -1268,6 +1282,7 @@
./testpar/t_span_tree.c
./testpar/t_init_term.c
./testpar/testpar.h
./testpar/testpflush.sh.in
./testpar/testphdf5.c
./testpar/testphdf5.h
......@@ -1374,14 +1389,17 @@
./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err
./tools/test/h5format_convert/testfiles/h5fc_v_non_chunked.ddl
./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl
./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl.err
./tools/test/h5format_convert/testfiles/h5fc_d_file-d.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl
./tools/test/h5format_convert/testfiles/h5fc_dname.ddl
./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl
./tools/test/h5format_convert/testfiles/h5fc_dname.err
./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl.err
./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl.err
./tools/test/h5format_convert/testfiles/h5fc_help.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_all.ddl
./tools/test/h5format_convert/testfiles/h5fc_nooption.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_n_1d.ddl
./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl
./tools/test/h5format_convert/testfiles/h5fc_non_v3.h5
./tools/test/h5format_convert/testfiles/h5fc_edge_v3.h5
./tools/test/h5format_convert/testfiles/h5fc_err_level.h5
......@@ -1451,6 +1469,11 @@
./tools/test/h5ls/vds_prefix/tvds-4.ls
./tools/test/h5ls/vds_prefix/tvds-5.ls
# h5ls test error files
./tools/test/h5ls/errfiles/nosuchfile.err
./tools/test/h5ls/errfiles/textlinksrc-nodangle-1.err
./tools/test/h5ls/errfiles/tgroup-1.err
# h5copy sources
./tools/src/h5copy/Makefile.am
./tools/src/h5copy/h5copy.c
......@@ -1506,10 +1529,11 @@
./tools/test/misc/testfiles/h5clear_less_after_size.ddl
./tools/test/misc/testfiles/h5clear_less_before_size.ddl
./tools/test/misc/testfiles/h5clear_missing_file.ddl
./tools/test/misc/testfiles/h5clear_missing_file.err
./tools/test/misc/testfiles/h5clear_noclose_after_size.ddl
./tools/test/misc/testfiles/h5clear_noclose_before_size.ddl
./tools/test/misc/testfiles/h5clear_no_mdc_image.ddl
./tools/test/misc/testfiles/h5clear_open_fail.ddl
./tools/test/misc/testfiles/h5clear_no_mdc_image.err
./tools/test/misc/testfiles/h5clear_open_fail.err
./tools/test/misc/testfiles/h5clear_status_noclose_after_size.ddl
./tools/test/misc/testfiles/h5clear_usage.ddl
./tools/test/misc/testfiles/h5clear_user_equal_after_size.ddl
......@@ -1563,10 +1587,6 @@
./tools/test/h5stat/testh5stat.sh.in
./tools/test/h5stat/testfiles/h5stat_dims1.ddl
./tools/test/h5stat/testfiles/h5stat_dims2.ddl
./tools/test/h5stat/testfiles/h5stat_err1_dims.ddl
./tools/test/h5stat/testfiles/h5stat_err1_links.ddl
./tools/test/h5stat/testfiles/h5stat_err1_numattrs.ddl
./tools/test/h5stat/testfiles/h5stat_err2_numattrs.ddl
./tools/test/h5stat/testfiles/h5stat_err_old_fill.h5
./tools/test/h5stat/testfiles/h5stat_err_old_fill.ddl
./tools/test/h5stat/testfiles/h5stat_err_old_layout.h5
......@@ -1604,6 +1624,15 @@
./tools/test/h5stat/testfiles/h5stat_threshold.h5
./tools/test/h5stat/testfiles/h5stat_tsohm.ddl
./tools/test/h5stat/testfiles/h5stat_tsohm.h5
./tools/test/h5stat/testfiles/h5stat_err_refcount.err
./tools/test/h5stat/testfiles/h5stat_err_old_layout.err
./tools/test/h5stat/testfiles/h5stat_err_old_fill.err
./tools/test/h5stat/testfiles/h5stat_err1_dims.err
./tools/test/h5stat/testfiles/h5stat_err1_links.err
./tools/test/h5stat/testfiles/h5stat_err1_numattrs.err
./tools/test/h5stat/testfiles/h5stat_err2_numattrs.err
./tools/test/h5stat/testfiles/h5stat_notexist.err
./tools/test/h5stat/testfiles/h5stat_nofile.err
# h5dump test files
./tools/testfiles/charsets.h5
......@@ -2263,7 +2292,6 @@
./tools/test/h5diff/testfiles/h5diff_600.txt
./tools/test/h5diff/testfiles/h5diff_601.txt
./tools/test/h5diff/testfiles/h5diff_601_ERR.err
./tools/test/h5diff/testfiles/h5diff_601_ERR.txt
./tools/test/h5diff/testfiles/h5diff_603.txt
./tools/test/h5diff/testfiles/h5diff_604.txt
./tools/test/h5diff/testfiles/h5diff_605.txt
......@@ -2370,21 +2398,12 @@
./tools/test/h5diff/testfiles/h5diff_452.txt
./tools/test/h5diff/testfiles/h5diff_453.txt
./tools/test/h5diff/testfiles/h5diff_454.txt
./tools/test/h5diff/testfiles/h5diff_454_ERR.err
./tools/test/h5diff/testfiles/h5diff_454_ERR.txt
./tools/test/h5diff/testfiles/dangling_link.err
./tools/test/h5diff/testfiles/h5diff_455.txt
./tools/test/h5diff/testfiles/h5diff_455_ERR.err
./tools/test/h5diff/testfiles/h5diff_455_ERR.txt
./tools/test/h5diff/testfiles/h5diff_456.txt
./tools/test/h5diff/testfiles/h5diff_457.txt
./tools/test/h5diff/testfiles/h5diff_457_ERR.err
./tools/test/h5diff/testfiles/h5diff_457_ERR.txt
./tools/test/h5diff/testfiles/h5diff_458.txt
./tools/test/h5diff/testfiles/h5diff_458_ERR.err
./tools/test/h5diff/testfiles/h5diff_458_ERR.txt
./tools/test/h5diff/testfiles/h5diff_459.txt
./tools/test/h5diff/testfiles/h5diff_459_ERR.err
./tools/test/h5diff/testfiles/h5diff_459_ERR.txt
./tools/test/h5diff/testfiles/h5diff_465.txt
./tools/test/h5diff/testfiles/h5diff_466.txt
./tools/test/h5diff/testfiles/h5diff_467.txt
......@@ -2474,6 +2493,7 @@
./tools/test/h5diff/testfiles/tudfilter.h5
./tools/test/h5diff/testfiles/tudfilter2.h5
./tools/test/h5diff/testfiles/h5diff_ud.txt
./tools/test/h5diff/testfiles/h5diff_udfail.err
./tools/test/h5diff/testfiles/h5diff_udfail.txt
./tools/test/h5diff/testfiles/diff_strings1.h5
./tools/test/h5diff/testfiles/diff_strings2.h5
......@@ -2574,6 +2594,7 @@
./tools/test/h5copy/testfiles/h5copy_extlinks_src.h5
./tools/test/h5copy/testfiles/h5copy_extlinks_trg.h5
./tools/test/h5copy/testfiles/h5copy_extlinks_src.out.ls
./tools/test/h5copy/testfiles/h5copy_misc1.err
./tools/test/h5copy/testfiles/h5copy_misc1.out
./tools/test/h5copy/testfiles/h5copytst_new.h5
./tools/test/h5copy/testfiles/h5copytst_new.out.ls
......@@ -2741,16 +2762,17 @@
# expected test output from testing h5watch
#
./hl/tools/testfiles/w-err-cmpd1.ddl
./hl/tools/testfiles/w-err-cmpd2.ddl
./hl/tools/testfiles/w-err-cmpd3.ddl
./hl/tools/testfiles/w-err-cmpd4.ddl
./hl/tools/testfiles/w-err-cmpd5.ddl
./hl/tools/testfiles/w-err-dset1.ddl
./hl/tools/testfiles/w-err-dset2.ddl
./hl/tools/testfiles/w-err-dset-nomax.ddl
./hl/tools/testfiles/w-err-dset-none.ddl
./hl/tools/testfiles/w-err-file.ddl
./hl/tools/testfiles/w-err-std.ddl
./hl/tools/testfiles/w-err-cmpd1.err
./hl/tools/testfiles/w-err-cmpd2.err
./hl/tools/testfiles/w-err-cmpd3.err
./hl/tools/testfiles/w-err-cmpd4.err
./hl/tools/testfiles/w-err-cmpd5.err
./hl/tools/testfiles/w-err-dset1.err
./hl/tools/testfiles/w-err-dset2.err
./hl/tools/testfiles/w-err-dset-nomax.err
./hl/tools/testfiles/w-err-dset-none.err
./hl/tools/testfiles/w-err-file.err
./hl/tools/testfiles/w-err-poll0.ddl
./hl/tools/testfiles/w-err-poll.ddl
./hl/tools/testfiles/w-err-width.ddl
......@@ -2852,6 +2874,32 @@
./java/src/jni/h5oImp.h
./java/src/jni/h5pImp.c
./java/src/jni/h5pImp.h
./java/src/jni/h5pACPLImp.c
./java/src/jni/h5pACPLImp.h
./java/src/jni/h5pDAPLImp.c
./java/src/jni/h5pDAPLImp.h
./java/src/jni/h5pDCPLImp.c
./java/src/jni/h5pDCPLImp.h
./java/src/jni/h5pDXPLImp.c
./java/src/jni/h5pDXPLImp.h
./java/src/jni/h5pFAPLImp.c
./java/src/jni/h5pFAPLImp.h
./java/src/jni/h5pFCPLImp.c
./java/src/jni/h5pFCPLImp.h
./java/src/jni/h5pGAPLImp.c
./java/src/jni/h5pGAPLImp.h
./java/src/jni/h5pGCPLImp.c
./java/src/jni/h5pGCPLImp.h
./java/src/jni/h5pLAPLImp.c
./java/src/jni/h5pLAPLImp.h
./java/src/jni/h5pLCPLImp.c
./java/src/jni/h5pLCPLImp.h
./java/src/jni/h5pOCPLImp.c
./java/src/jni/h5pOCPLImp.h
./java/src/jni/h5pOCpyPLImp.c
./java/src/jni/h5pOCpyPLImp.h
./java/src/jni/h5pStrCPLImp.c
./java/src/jni/h5pStrCPLImp.h
./java/src/jni/h5plImp.c
./java/src/jni/h5plImp.h
./java/src/jni/h5rImp.c
......@@ -3146,7 +3194,10 @@
./java/lib/ext/slf4j-simple-1.7.25.jar
# CMake-specific Files
./config/intel.cmake
./config/toolchain/crayle.cmake
./config/toolchain/GCC.cmake
./config/toolchain/intel.cmake
./config/toolchain/PGI.cmake
./config/cmake/cacheinit.cmake
./config/cmake/CMakeFindJavaCommon.cmake
......@@ -3177,6 +3228,7 @@
./config/cmake/UseJavaSymlinks.cmake
./config/cmake/userblockTest.cmake
./config/cmake/vfdTest.cmake
./config/cmake/wait_H5Tinit.cmake
./config/cmake_ext_mod/ConfigureChecks.cmake
./config/cmake_ext_mod/CTestCustom.cmake
......@@ -3202,7 +3254,6 @@
# CMake-specific Examples Files
./config/cmake/HDF5_Examples.cmake.in
./config/cmake/HDF518_Examples.cmake.in
./release_docs/USING_CMake_Examples.txt
./CMakeLists.txt
......@@ -3216,6 +3267,7 @@
./c++/src/CMakeLists.txt
./c++/test/CMakeLists.txt
./c++/test/CMakeTests.cmake
./c++/test/CMakeVFDTests.cmake
./examples/CMakeLists.txt
./examples/CMakeTests.cmake
./examples/run-all-ex.sh
......@@ -3259,6 +3311,7 @@
./test/ShellTests.cmake
./testpar/CMakeLists.txt
./testpar/CMakeTests.cmake
./testpar/CMakeVFDTests.cmake
./tools/CMakeLists.txt
./tools/lib/CMakeLists.txt
./tools/src/CMakeLists.txt
......@@ -3291,6 +3344,7 @@
./tools/src/h5repack/CMakeLists.txt
./tools/test/h5repack/CMakeLists.txt
./tools/test/h5repack/CMakeTests.cmake
./tools/test/h5repack/CMakeVFDTests.cmake
./tools/src/h5stat/CMakeLists.txt
./tools/test/h5stat/CMakeLists.txt
./tools/test/h5stat/CMakeTests.cmake
......@@ -3310,6 +3364,11 @@
./config/cmake/scripts/HDF5config.cmake
./config/cmake/scripts/HDF5options.cmake
# CMake-specific HPC Scripts
./config/cmake/scripts/HPC/sbatch-HDF5options.cmake
./config/cmake/scripts/HPC/bsub-HDF5options.cmake
./config/cmake/scripts/HPC/raybsub-HDF5options.cmake
# Files generated by autogen
./aclocal.m4
./bin/compile
......
Makefile.in
View file @ a6bd2aa2
......@@ -392,7 +392,6 @@ MAINT = @MAINT@
MAKEINFO = @MAKEINFO@
MANIFEST_TOOL = @MANIFEST_TOOL@
MEMORYALLOCSANITYCHECK = @MEMORYALLOCSANITYCHECK@
METADATATRACEFILE = @METADATATRACEFILE@
MKDIR_P = @MKDIR_P@
MPE = @MPE@
NM = @NM@
......@@ -426,6 +425,7 @@ PAC_FORTRAN_NUM_INTEGER_KINDS = @PAC_FORTRAN_NUM_INTEGER_KINDS@
PARALLEL = @PARALLEL@
PARALLEL_FILTERED_WRITES = @PARALLEL_FILTERED_WRITES@
PATH_SEPARATOR = @PATH_SEPARATOR@
PREADWRITE = @PREADWRITE@
PROFILING = @PROFILING@
RANLIB = @RANLIB@
ROOT = @ROOT@
......
README.txt 100755 → 100644
View file @ a6bd2aa2
HDF5 version 1.10.4 released on 2018-10-05
HDF5 version 1.10.5 released on 2019-02-25
------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
......
bin/batch/cori_ctestP.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -C haswell
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/cori_ctestS.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -C haswell
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
echo "Done running $CMD"
bin/batch/cori_knl_ctestP.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -C knl,quad,cache
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/cori_knl_ctestS.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -C knl,quad, cache
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
echo "Done running $CMD"
bin/batch/ctestP.lsf.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/tcsh
### LSF syntax
#BSUB -nnodes 1 #number of nodes
#BSUB -W 30 #walltime in minutes
#BSUB -G guests #account
#BSUB -e ctestPerrors.txt #stderr
#BSUB -o ctestPoutput.txt #stdout
#BSUB -J hdf5_ctestP #job
##BSUB -q pbatch #queue to use
#BSUB -q pdebug
##date; hostname
##echo -n 'JobID is '; echo $LSB_JOBID
cd @HDF5_BINARY_DIR@
echo "Run parallel test command. Test output will be in build/ctestP.out"
ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
echo "Done running ctest parallel command."
bin/batch/ctestP.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestP
cd @HDF5_BINARY_DIR@
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/ctestS.lsf.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/tcsh
### LSF syntax
#BSUB -nnodes 1 #number of nodes
#BSUB -W 29 #walltime in minutes
#BSUB -G guests #account
#BSUB -e ctestSerrors.txt #stderr
#BSUB -o ctestSoutput.txt #stdout
#BSUB -J hdf5_ctestS #job
##BSUB -q pbatch #queue to use
#BSUB -q pdebug
cd @HDF5_BINARY_DIR@
echo "Run command. Test output will be in build/ctestS.out"
ctest . -E 'TEST_PAR|PH5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
##$CMD >& ctestS.out
echo "Done running command."
bin/batch/ctestS.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
echo "Done running $CMD"
bin/batch/knl_H5detect.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -p knl -C quad
#SBATCH --nodes=1
#SBATCH -t 00:10:00
#SBATCH --mail-type=BEGIN,END,FAIL
#SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=knl_h5detect
# Inputs: Build directory, output file name, executable file name (username/email if available).
PROGNAME=H5detect
OUTPUT=H5Tinit.c
CMD="@HDF5_BINARY_DIR@/bin/${PROGNAME} @HDF5_GENERATED_SOURCE_DIR@/${OUTPUT}"
echo "Run $CMD"
srun -n 1 $CMD
echo "Done running $CMD"
bin/batch/knl_ctestP.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -p knl -C quad,cache
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
#run parallel tests except t_cache_image test
CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
echo "Run $CMD. Test output will be in build/ctestP.out"
$CMD >& ctestP.out
echo "Done running $CMD"
bin/batch/knl_ctestS.sl.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/bash
#SBATCH -p knl -C quad,cache
#SBATCH --nodes=1
#SBATCH -t 00:30:00
#SBATCH --mail-type=BEGIN,END,FAIL
##SBATCH --mail-user=<username>@sandia.gov
#SBATCH --export=ALL
#SBATCH --job-name=h5_ctestS
cd @HDF5_BINARY_DIR@
CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
echo "Run $CMD. Test output will be in build/ctestS.out"
$CMD >& ctestS.out
echo "Done running $CMD"
bin/batch/ray_ctestP.lsf.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/tcsh
### LSF syntax
#BSUB -n 6 #number of nodes
#BSUB -R "span[ptile=6]"
#BSUB -W 30 #walltime in minutes
#BSUB -G guests #account
#BSUB -e ctestPerrors.txt #stderr
#BSUB -o ctestPoutput.txt #stdout
#BSUB -J hdf5_ctestP #job
##BSUB -q pbatch #queue to use
#BSUB -q pdebug
##date; hostname
##echo -n 'JobID is '; echo $LSB_JOBID
cd @HDF5_BINARY_DIR@
echo "Run parallel test command. Test output will be in build/ctestP.out"
ctest . -R 'MPI_TEST_' -E t_cache_image -C Release -T test >& ctestP.out
echo "Done running ctest parallel command."
bin/batch/ray_ctestS.lsf.in.cmake 0 → 100644
View file @ a6bd2aa2
#!/bin/tcsh
### LSF syntax
#BSUB -n 1 #number of nodes
#BSUB -W 29 #walltime in minutes
#BSUB -G guests #account
#BSUB -e ctestSerrors.txt #stderr
#BSUB -o ctestSoutput.txt #stdout
#BSUB -J hdf5_ctestS #job
##BSUB -q pbatch #queue to use
#BSUB -q pdebug
cd @HDF5_BINARY_DIR@
echo "Run command. Test output will be in build/ctestS.out"
ctest . -E 'MPI_TEST_' -C Release -j 32 -T test >& ctestS.out
##$CMD >& ctestS.out
echo "Done running command."