.gitlab-ci.yml

 #
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
+# Copyright (C) 2005-2020 Centre National d'Etudes Spatiales (CNES)
 #
 # This file is part of Orfeo Toolbox
 #
@@ -106,7 +106,9 @@ stages:
 #-------------------------- precheck job ---------------------------------------
 fast-build:
   extends: .common
-  only: [merge_requests, branches]
+  only:
+    - merge_requests
+    - branches
   stage: precheck
   image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-native-develop:latest
   before_script:
@@ -136,10 +138,15 @@ legal-check:
 #------------------------- prepare & build jobs --------------------------------
 debian-build:
   extends: .common-build
-  image: $BUILD_IMAGE_REGISTRY/otb-debian-native:unstable
+  image: $BUILD_IMAGE_REGISTRY/otb-debian-native:testing
+  allow_failure: true
   script:
-    - xvfb-run -a -n 1 -s "-screen 0 1024x768x24 -dpi 96" ctest -V -S CI/main_ci.cmake -DIMAGE_NAME:string=debian-unstable-gcc
-  dependencies: []
+    - xvfb-run -a -n 1 -s "-screen 0 1024x768x24 -dpi 96" ctest -V -S CI/main_ci.cmake -DIMAGE_NAME:string=debian-testing-gcc
+  after_script:
+    - export CI_ALLOW_FAILURE=ON
+    - python3 -u CI/cdash_handler.py
+  needs:
+    - job: fast-build
 
 ## Ubuntu superbuild
 ubuntu-xdk-prepare:
@@ -158,8 +165,9 @@ ubuntu-xdk-build-doc:
     - mv build/Documentation/Doxygen/OTB-Doxygen-*.tar.bz2 . || true
     - xvfb-run -a -n 1 -s "-screen 0 1024x768x24 -dpi 96" ctest -V -S CI/main_packages.cmake -DIMAGE_NAME:string=ubuntu-18.04-llvm-xdk -DNAME_SUFFIX:string=-glibc-2.27
     - mv build_packages/OTB-*.run . || true
-  dependencies:
-    - ubuntu-xdk-prepare
+  needs:
+    - job: ubuntu-xdk-prepare
+      artifacts: true
 
 ## CentOS superbuild
 centos-xdk-prepare:
@@ -175,8 +183,9 @@ centos-xdk-build:
     - xvfb-run -a -n 1 -s "-screen 0 1024x768x24 -dpi 96" ctest -V -S CI/main_superbuild.cmake -DIMAGE_NAME:string=centos-6.6-gcc
     - xvfb-run -a -n 1 -s "-screen 0 1024x768x24 -dpi 96" ctest -V -S CI/main_packages.cmake -DIMAGE_NAME:string=centos-6.6-gcc
     - mv build_packages/OTB-*.run . || true
-  dependencies:
-    - centos-xdk-prepare
+  needs:
+    - job: centos-xdk-prepare
+      artifacts: true
 
 ## MacOS superbuild
 macos-xdk-prepare:
@@ -194,8 +203,9 @@ macos-xdk-build:
     - ctest -V -S CI/main_superbuild.cmake -DIMAGE_NAME:string=macos-10.11.6-clang
     - ctest -V -S CI/main_packages.cmake -DIMAGE_NAME:string=macos-10.11.6-clang
     - mv build_packages/OTB-*.run . || true
-  dependencies:
-    - macos-xdk-prepare
+  needs:
+    - job: macos-xdk-prepare
+      artifacts: true
 
 ## Windows
 .windows-prepare:
@@ -234,8 +244,9 @@ windows-10-build:
     - clcache.exe -s
     - ctest -V -S CI/main_packages.cmake
     - move "build_packages\OTB-*.zip" . || dir build_packages
-  dependencies:
-    - windows-10-prepare
+  needs:
+    - job: windows-10-prepare
+      artifacts: true
 
 # - Win8.1
 windows-8-prepare:
@@ -259,8 +270,9 @@ windows-8-build:
     - clcache.exe -s
     - ctest -V -S CI/main_packages.cmake
     - move "build_packages\OTB-*.zip" . || dir build_packages
-  dependencies:
-    - windows-8-prepare
+  needs:
+    - job: windows-8-prepare
+      artifacts: true
 
 #------------------------- QA related jobs -------------------------------------
 ubuntu-xdk-qa-code-coverage:
@@ -282,8 +294,9 @@ ubuntu-xdk-qa-code-coverage:
     - saxon-xslt -o build/ctest_report.xml
                  build/Testing/`head -n 1 build/Testing/TAG`/Test.xml
                  CI/ctest2junit.xsl
-  dependencies:
-    - ubuntu-xdk-prepare
+  needs:
+    - job: ubuntu-xdk-prepare
+      artifacts: true
 
 ubuntu-xdk-qa-static-analysis:
   extends: .common-build
@@ -305,8 +318,9 @@ ubuntu-xdk-qa-static-analysis:
                -i Modules/ThirdParty Modules
                2> build/cppcheck_report.xml
   after_script: []
-  dependencies:
-    - ubuntu-xdk-prepare
+  needs:
+    - job: ubuntu-xdk-prepare
+      artifacts: true
 
 ubuntu-xdk-report:
   extends: .common
@@ -325,13 +339,54 @@ ubuntu-xdk-report:
     - sonar-scanner -Dproject.settings=sonar-project.properties
                     -Dsonar.host.url=https://sonar.orfeo-toolbox.org
                     -Dsonar.login=$SONAR_OTB_TOKEN
+                    -Dsonar.projectKey=$CI_PROJECT_NAMESPACE-$CI_PROJECT_NAME
                     `test -z "$CI_COMMIT_TAG" || echo "-Dsonar.projectVersion=$CI_COMMIT_TAG"`
                     -Dsonar.branch.name=$CI_COMMIT_REF_NAME
 
   after_script: []
-  dependencies:
-    - ubuntu-xdk-qa-code-coverage
-    - ubuntu-xdk-qa-static-analysis
+  needs:
+    - job: ubuntu-xdk-qa-code-coverage
+      artifacts: true
+    - job: ubuntu-xdk-qa-static-analysis
+      artifacts: true
+
+#------------------------- Conda packages jobs ---------------------------------
+conda-linux-build:
+  extends: .common
+  stage: build
+  only:
+    - nightly
+    - /^release-[0-9]+\.[0-9]+$/@orfeotoolbox/otb
+  image: $BUILD_IMAGE_REGISTRY/otb-conda-build:latest
+  allow_failure: true
+  script:
+    - export otb_tag=${CI_COMMIT_TAG:-$CI_COMMIT_SHORT_SHA}
+    - ./CI/conda_build.sh
+  after_script: []
+  needs:
+    - job: fast-build
+      artifacts: false
+  artifacts:
+    when: always
+    expire_in: 24 hrs
+    paths:
+      - conda-bld/*
+
+conda-linux-deploy:
+  extends: .general
+  stage: deploy
+  only:
+    - /^release-[0-9]+\.[0-9]+$/@orfeotoolbox/otb
+  image: $BUILD_IMAGE_REGISTRY/otb-conda-build:latest
+  before_script:
+    # Provision efficiently the local LFS cache before checkout
+    - git lfs fetch origin $CI_COMMIT_SHA
+    - git checkout -f -q $CI_COMMIT_SHA
+  script:
+    - ./CI/conda_deploy.sh
+  needs:
+    - job: conda-linux-build
+      artifacts: yes
 
 #---------------------------- Deploy job ---------------------------------------
 deploy:
@@ -349,12 +404,17 @@ deploy:
     - git checkout -f -q $CI_COMMIT_SHA
   script:
     - ./CI/deploy.sh $CI_COMMIT_REF_NAME $RC_NUMBER
-  dependencies:
-    - ubuntu-xdk-build-doc
-    - centos-xdk-build
-    - macos-xdk-build
-    - windows-8-build
-    - windows-10-build
+  needs:
+    - job: ubuntu-xdk-build-doc
+      artifacts: true
+    - job: centos-xdk-build
+      artifacts: true
+    - job: macos-xdk-build
+      artifacts: true
+    - job: windows-8-build
+      artifacts: true
+    - job: windows-10-build
+      artifacts: true
 
 release-container:
   image: $BUILD_IMAGE_REGISTRY/otb-alpine:3.7

.mailmap

@@ -5,21 +5,25 @@ Antoine Regimbeau <antoine.regimbeau@c-s.fr>
 Antoine Regimbeau <antoine.regimbeau@c-s.fr>              aregimbe <antoine.regimbeau@c-s.fr>
 Antoine Regimbeau <antoine.regimbeau@c-s.fr>              aregimbeau <antoine.regimbeau@c-s.fr>
 Arnaud Jaen <arnaud.jaen@c-s.fr>
-Aurélie Emilien <aurelie.emilien@c-s.fr>                  Aurelie Emilien <aurelie.emilien@c-s.fr>
-Aurélie Emilien <aurelie.emilien@c-s.fr>
+Arthur Vincent <arthur.vincent@c-s.fr>
+Arthur Vincent <arthur.vincent@c-s.fr>                    Arthur Vincent <vincenta@cesbio.cnes.fr>
 Aurelien Bricier <aurelien.bricier@c-s.fr>
+Aurélie Emilien <aurelie.emilien@c-s.fr>
+Aurélie Emilien <aurelie.emilien@c-s.fr>                  Aurelie Emilien <aurelie.emilien@c-s.fr>
 Bas Couwenberg <sebastic@debian.org>
 Bas Couwenberg <sebastic@debian.org>                      Bas Couwenberg <sebastic@xs4all.nl>
+Carole Amiot <carole.amiot@cnes.fr>
+Carole Amiot <carole.amiot@cnes.fr>                       Carole Amiot <carole.amiot@thales-services.fr>
 Caroline Ruffel <caroline.ruffel@c-s.fr>
-Cédric Traizet <cedric.traizet@c-s.fr>                    Cedric <cedric.traizet@c-s.fr>
-Cédric Traizet <cedric.traizet@c-s.fr>                    Cédric Traizet <traizetc@cesbio.cnes.fr>
-Cédric Traizet <cedric.traizet@c-s.fr>                    ctraizet <cedric.traizet@c-s.fr>
-Cédric Traizet <cedric.traizet@c-s.fr>                    Traizet Cedric <cedric.traizet@cesbio.cnes.fr>
 Charles Peyrega <charles.peyrega@c-s.fr>
 Chia Aik Song <crscas@nus.edu.sg>
 Christophe Palmann <christophe.palmann@c-s.fr>
 Conrad Bielski <conrad.bielski@yahoo.com>
 Cyrille Valladeau <cyrille.valladeau@c-s.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Cedric <cedric.traizet@c-s.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Cédric Traizet <traizetc@cesbio.cnes.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Traizet Cedric <cedric.traizet@cesbio.cnes.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    ctraizet <cedric.traizet@c-s.fr>
 Daniel McInerney <daniel.o.mcinerney@gmail.com>
 Daniel McInerney <daniel.o.mcinerney@gmail.com>           dmci <daniel.o.mcinerney@gmail.com>
 Daphne Deleflie <daphne.deleflie@thalesgroup.com>
@@ -36,6 +40,8 @@ Grégoire Mercier <gregoire.mercier@telecom-bretagne.eu>   Gregoire Mercier <gre
 Guilhem Bonnefille <guilhem.bonnefille@c-s.fr>
 Guillaume Borrut <guillaume.borrut@c-s.fr>
 Guillaume Pasero <guillaume.pasero@c-s.fr>
+Guillaume Pernot <guillaume.pernot@c-s.fr>
+Guillaume Pernot <guillaume.pernot@c-s.fr>                gpernot <guillaume.pernot@c-s.fr>
 janestar <janestar92@163.com>
 Jee Roen <jeroen.staab@posteo.de>
 Jonathan Guinet <jonathan.guinet@c-s.fr>
@@ -50,7 +56,7 @@ Julien Michel <julien.michel@cnes.fr>                     Julien Michel <julien.
 Julien Michel <julien.michel@cnes.fr>                     Julien Michel <julien.michel@orfeo-toolbox.org>
 Laurențiu Nicola <lnicola@dend.ro>                        Laurentiu Nicola <lnicola@dend.ro>
 Laurențiu Nicola <lnicola@dend.ro>                        Laurențiu Nicola <grayshade@gmail.com>
-Luc Hermitte <luc.hermitte@c-s.fr>
+Luc Hermitte <luc.hermitte@c-s.fr>                        Luc Hermitte <luc.hermitte@cnes.fr>
 Ludovic Hussonnois <ludovic.hussonnois@c-s.fr>
 Manuel Grizonnet <manuel.grizonnet@cnes.fr>
 Manuel Grizonnet <manuel.grizonnet@cnes.fr>               Grizonnet Manuel <manuel.grizonnet@cnes.fr>
@@ -70,26 +76,26 @@ Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <moham
 Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <rashad.kanavath.email.com>
 Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <rashad.kanvath@c-s.fr>
 Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad M <rashad.kanavath@c-s.fr>
-Rémi Cresson <remi.cresson@irstea.fr>                     remicres <remi.cresson@teledetection.fr>
-Rémi Cresson <remi.cresson@irstea.fr>                     Remi Cresson <remi.cresson@irstea.fr>
-Rémi Cresson <remi.cresson@irstea.fr>                     remi cresson <remi.cresson@teledetection.fr>
-Rémi Cresson <remi.cresson@irstea.fr>                     remi <remi.cresson@irstea.fr>
-Rémi Cresson <remi.cresson@irstea.fr>                     Rémi <remi.cresson@teledetection.fr>
 Romain Garrigues <romain.garrigues@c-s.fr>
 Rosa Ruiloba <rosario.ruiloba@c-s.fr>
-Sébastien Dinot <sebastien.dinot@c-s.fr>
-Sébastien Dinot <sebastien.dinot@c-s.fr>                  Sebastien Dinot <sebastien.dinot@c-s.fr>
-Sébastien Dinot <sebastien.dinot@c-s.fr>                  Achille Talon <atalon@dinot.net>
+Rémi Cresson <remi.cresson@irstea.fr>                     Remi Cresson <remi.cresson@irstea.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     Rémi <remi.cresson@teledetection.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remi <remi.cresson@irstea.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remi cresson <remi.cresson@teledetection.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remicres <remi.cresson@teledetection.fr>
 Sebastien Harasse <sebastien.harasse@c-s.fr>
 Stephane Albert <stephane.albert@c-s.fr>
-Stephane Albert <stephane.albert@c-s.fr>                  Stephane Albert <salbert@dora.si.c-s.fr>
 Stephane Albert <stephane.albert@c-s.fr>                  Stephane ALBERT <stephane.albert@c-s.fr>
+Stephane Albert <stephane.albert@c-s.fr>                  Stephane Albert <salbert@dora.si.c-s.fr>
 Sylvain Poulain <kikislater@users.noreply.github.com>     Sylvain POULAIN <kikislater@users.noreply.github.com>
+Sébastien Dinot <sebastien.dinot@c-s.fr>
+Sébastien Dinot <sebastien.dinot@c-s.fr>                  Achille Talon <atalon@dinot.net>
+Sébastien Dinot <sebastien.dinot@c-s.fr>                  Sebastien Dinot <sebastien.dinot@c-s.fr>
 Thomas Feuvrier <thomas.feuvrier@c-s.fr>
 Tishampati Dhar <devnull@localhost>
 Victor Poughon <victor.poughon@cnes.fr>
 Vincent Poulain <vincent.poulain@thalesgroup.com>
-Yannick Tanguy <yannick.tanguy@cnes.fr>                   Yannick TANGUY <yannick.tanguy@cnes.fr>
 Yannick Tanguy <yannick.tanguy@cnes.fr>                   Yannick TANGUY <tanguyy@visu01.sis.cnes.fr>
+Yannick Tanguy <yannick.tanguy@cnes.fr>                   Yannick TANGUY <yannick.tanguy@cnes.fr>
 Yannick Tanguy <yannick.tanguy@cnes.fr>                   ytanguy <yannick.tanguy@cnes.fr>
 Yin Tiangang <crsyt@nus.edu.sg>

CI/cdash_handler.py

@@ -44,6 +44,9 @@ def CheckEnvParameters(params, verbose=True):
       return False
   return True
 
+class CDashException(Exception):
+  pass
+
 """
 Handler class to retrieve build informations
 """
@@ -78,8 +81,7 @@ class Handler:
         print ( configure_xml )
       self.configure_path = configure_xml
       return self.configure_path
-    print("Could not find the Configure.xml produced by ctest")
-    sys.exit(1)
+    raise CDashException("Could not find the Configure.xml produced by ctest")
 
   def ParseConfigureFile(self):
     """
@@ -98,14 +100,11 @@ class Handler:
     if trace:
       print( root.attrib )
     if not 'Name' in root.keys():
-      print("Can't find site name in Configure.XML")
-      sys.exit(1)
+      raise CDashException("Can't find site name in Configure.XML")
     if not 'BuildName' in root.keys():
-      print("Can't find build name in Configure.XML")
-      sys.exit(1)
+      raise CDashException("Can't find build name in Configure.XML")
     if not 'BuildStamp' in root.keys():
-      print("Can't find build stamp in Configure.XML")
-      sys.exit(1)
+      raise CDashException("Can't find build stamp in Configure.XML")
     self.site = root.get('Name')
     self.name = root.get('BuildName')
     self.stamp = root.get('BuildStamp')
@@ -129,8 +128,7 @@ class Handler:
       if key == "project":
         project = value
     if ( site == "" or stamp == "" or name == "" or project == ""):
-      print( "Missing argument for buildid request site:"+site+", stamp:"+stamp+", name:"+name+", project:"+project+".")
-      sys.exit(1)
+      raise CDashException("Missing argument for buildid request site:"+site+", stamp:"+stamp+", name:"+name+", project:"+project+".")
     elif trace:
       print( "Argument for buildid request site:"+site+", stamp:"+stamp+", name:"+name+", project:"+project+".")
     buildid_api = "/api/v1/getbuildid.php?"
@@ -157,8 +155,7 @@ class Handler:
         print ( "build id is ", self.buildid)
       return buildid.group(1)
     else:
-      print("Error in recovering buildid")
-      sys.exit(1)
+      raise CDashException("Error in recovering buildid")
 
   def GetBuildUrl (self , buildid = "" ):
     """
@@ -246,6 +243,12 @@ if __name__ == "__main__":
   if ( len(sys.argv) < 6 and len(sys.argv) > 1 ):
     print("Usage : "+sys.argv[0]+" commit_sha1 project_id project_directory token ref_name")
     sys.exit(1)
+
+  if os.environ.get('CI_SKIP_CDASH', False):
+    sys.exit(0)
+
+  allow_failure = os.environ.get('CI_ALLOW_FAILURE', False)
+
   if ( len(sys.argv) >= 6):
     sha1 = sys.argv[1]
     proj = sys.argv[2]
@@ -272,6 +275,8 @@ if __name__ == "__main__":
   if trace:
     print("build_dir is: " + build_dir)
   handler.build_dir = build_dir
+
+  try:
     handler.GetConfigureFile()
     handler.ParseConfigureFile()
     if handler.GetBuildId() is None:
@@ -286,6 +291,13 @@ if __name__ == "__main__":
       sys.exit(0)
     gitlab_url = "https://gitlab.orfeo-toolbox.org/api/v4/projects/"
     gitlab_url += proj + "/statuses/" + sha1
+  except CDashException as e:
+    if allow_failure:
+      state = 'success'
+    else:
+      print(e)
+      sys.exit(1)
+
   params = urllib.parse.urlencode({'name':'cdash:' + handler.site , 'state': state ,\
    'target_url' : cdash_url , 'description' : error , 'ref' : refn })
   gitlab_request = urllib.request.Request(gitlab_url)

CMake/DeployQtConf.cmake → CI/conda_build.sh

+#!/usr/bin/env bash
 #
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
+# Copyright (C) 2005-2020 Centre National d'Etudes Spatiales (CNES)
 #
 # This file is part of Orfeo Toolbox
 #
@@ -17,22 +18,21 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
+# This script aims to identify the unreferenced authors to invite the team to
+# check if they have already signed the contributor license agreement (CLA).
+# When this is done, the author must be added to the reference list.
 
-# Deploy a qt.conf file in the specified
-# target build directory, as a pre-build step
-macro( deploy_qt_conf TARGET_NAME )
+source /build/anaconda3/bin/activate
 
-  add_custom_command( 
-      TARGET ${TARGET_NAME}
-      PRE_BUILD 
-      COMMAND ${CMAKE_COMMAND}
-      ARGS -D QT_TRANSLATIONS_DIR:PATH=${QT_TRANSLATIONS_DIR}
-           -D QT_PLUGINS_DIR:PATH=${QT_PLUGINS_DIR}
-           -D Monteverdi_SOURCE_DIR:PATH=${Monteverdi_SOURCE_DIR}
-           -D TARGET_DIR:PATH=$<TARGET_FILE_DIR:${TARGET_NAME}>
-           -P ${Monteverdi_SOURCE_DIR}/CMake/DeployQtConfScript.cmake
-      COMMENT "Deploying qt.conf in ${TARGET_NAME} build dir"
-      VERBATIM
-  )
+cd /build/staged-recipes/recipes/
 
-endmacro()
+conda build ${CONDA_BUILD_OPTIONS} muparserx
+conda build ${CONDA_BUILD_OPTIONS} openthreads
+conda build ${CONDA_BUILD_OPTIONS} ossim
+conda build ${CONDA_BUILD_OPTIONS} shark
+conda build ${CONDA_BUILD_OPTIONS} tinyxml
+conda build ${CONDA_BUILD_OPTIONS} libitk
+conda build ${CONDA_BUILD_OPTIONS} otb
+
+mkdir ${CI_PROJECT_DIR}/conda-bld
+mv /build/anaconda3/conda-bld/linux-64/*.tar.bz2 ${CI_PROJECT_DIR}/conda-bld

CMake/DeployQtConfScript.cmake → CI/conda_deploy.sh

+#!/usr/bin/env bash
 #
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
+# Copyright (C) 2005-2020 Centre National d'Etudes Spatiales (CNES)
 #
 # This file is part of Orfeo Toolbox
 #
@@ -17,7 +18,13 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
+# This script aims to identify the unreferenced authors to invite the team to
+# check if they have already signed the contributor license agreement (CLA).
+# When this is done, the author must be added to the reference list.
 
-configure_file(${Monteverdi_SOURCE_DIR}/CMake/qt.conf.in
-               ${TARGET_DIR}/qt.conf
-               @ONLY)
\ No newline at end of file
+source /build/anaconda3/bin/activate
+
+ANACONDA_ORGANIZATION="orfeotoolbox"
+
+anaconda login --username ${ANACONDA_LOGIN} --password ${ANACONDA_PASSWORD} --hostname ${CI_JOB_ID}
+anaconda upload --force --user ${ANACONDA_ORGANIZATION} conda-bld/*.tar.bz2 || /bin/true

CI/contributors_check.sh

 #!/bin/bash
 #
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
+# Copyright (C) 2005-2020 Centre National d'Etudes Spatiales (CNES)
 #
 # This file is part of Orfeo Toolbox
 #

CI/debian-unstable-gcc.cmake → CI/debian-testing-gcc.cmake

@@ -21,7 +21,7 @@
 # Configuration options for debian-unstable-gcc
 
 set(site_option
-"opencv_INCLUDE_DIR:PATH=/usr/include
+"OpenCV_DIR:PATH=/usr
 OTB_USE_MPI:BOOL=OFF
 OTB_USE_SHARK:BOOL=OFF
 ")

CMake/FindAgg.cmake → CI/deploy-prod.sh

+#!/bin/bash
 #
 # Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
 #
@@ -18,31 +19,28 @@
 # limitations under the License.
 #
 
-# Find the AntiGrain Geometry graphical toolkit header files
-#
-#   AGG_FOUND        - True if AGG found.
-#   AGG_INCLUDE_DIRS - where to find agg_pixfmt_rgba.h, etc.
-#
-
-if( AGG_INCLUDE_DIR )
-    # Already in cache, be silent
-    set( AGG_FIND_QUIETLY TRUE )
-endif()
-
-find_path( AGG_INCLUDE_DIR agg_pixfmt_rgba.h
-  PATH_SUFFIXES agg2
-  )
+# This script aims at moving and renaming source, packages and documentation from
+# staging area to production area
 
-# handle the QUIETLY and REQUIRED arguments and set AGG_FOUND to TRUE if
-# all listed variables are TRUE
-include( FindPackageHandleStandardArgs )
-find_package_handle_standard_args( Agg DEFAULT_MSG AGG_INCLUDE_DIR )
+staging_area=/home/otbpush/test/staging
+#check if we are dealing with the right packages
 
-mark_as_advanced( AGG_INCLUDE_DIR )
+pack_suffix=-$(echo "$CI_COMMIT_TAG" | grep -o "rc[0-9]*") # this retrieve the rc number
+echo "pack_suffix=${pack_suffix}"
 
-if(AGG_FOUND)
-  set(AGG_INCLUDE_DIRS ${AGG_INCLUDE_DIR})
-else()
-  set(AGG_INCLUDE_DIRS)
-endif()
+echo "Renaming binary packages"
+# find build_packages/. -name "*.run" \
+# -exec sh -c 'mv "$1" "${1%.run}${pack_suffix}.run"' _ {} \;
+packages_list=$(ls ${staging_area} | grep -E "OTB-[0-9]*.[0-9]*.[0-9]*-.*\.(run|zip)")
+ls -all build_packages/
+for name in $packages_list
+  do
+  len=${#name}
+  #add pack_suffix to the name
+  mv "$name" "${name:0:$len-4}${pack_suffix}${name:$len-4}"
+done
 
+# TO REMOVE
+###########
+ls -all build_packages/
+###########

CI/deploy.sh

@@ -19,30 +19,21 @@
 # limitations under the License.
 #
 
-# Configure git for tar.xz
-git config tar.tar.xz.command "xz -c"
-
-pack_suffix=""
-if [ $1 = "develop" ] # check if the branch name is develop or not
+if [ "$CI_COMMIT_REF_NAME" = "develop" ] # check if the branch name is develop or not
 then # we are on develop
   jobs_directory=/home/otbpush/test/$(date +%F)
 else # we are on a release branch
   jobs_directory=/home/otbpush/test/staging
-  if [ "$#" -eq 2 ]
-    then # there is a rc tag, we need a suffix for packages
-    pack_suffix=-$(echo "$2" | grep -o "rc[0-9]*") # this retrieve the rc number
-  fi
 fi
 
 echo "jobs_directory=${jobs_directory}"
-echo "pack_suffix=${pack_suffix}"
 
 # Create today's directory on serveur otb5-vm2
 echo "Creating today's directory"
 ssh otbpush@otb5-vm2.orfeo-toolbox.org mkdir -p ${jobs_directory}
 # Delete latest
 echo "Deleting latest directory"
-if [ $1 = "develop" ]
+if [ "$CI_COMMIT_REF_NAME" = "develop" ]
 then # On develop
   ssh otbpush@otb5-vm2.orfeo-toolbox.org rm -rf /home/otbpush/test/latest
   # Create symilink
@@ -50,19 +41,13 @@ then # On develop
   # Cleaning old directory
   matching_dirs=$(ls -1 | grep -oE '^20[0-9]{2}-[0-9]{2}-[0-9]{2}$' | sort)
   history_length=11
-  rm -rf $(echo $matching_dirs | tr ' ' '\n' | head -n -${history_length})
+  rm -rf "$(echo "$matching_dirs" | tr ' ' '\n' | head -n -${history_length})"
 else # On release
   # Remove what is inside staging area
   ssh otbpush@otb5-vm2.orfeo-toolbox.org rm -rf ${jobs_directory}/*
 fi
 
 # Push package
-echo "Renaming binary packages"
-for name in $(find . -regex "./OTB-.*\(run\|zip\)"); do
-  len=(${#name})
-  mv "$name" "${name:0:$len-4}${pack_suffix}${name:$len-4}"
-done
-
 echo "Pushing binary packages"
 scp OTB-*.{run,zip} otbpush@otb5-vm2.orfeo-toolbox.org:${jobs_directory}/.
 # Push doc
@@ -71,9 +56,9 @@ scp {CookBook-*-html.tar.gz,OTB-Doxygen-*.tar.bz2} otbpush@otb5-vm2.orfeo-toolbo
 
 # Create zip, tar.gz and tar.xy source
 echo "Creating source tarball and zip"
-git archive --format=zip -o OTB-sources-$CI_COMMIT_SHORT_SHA.zip HEAD
-git archive --format=tgz -o OTB-sources-$CI_COMMIT_SHORT_SHA.tar.gz HEAD
-git archive --format=tar.xz -o OTB-sources-$CI_COMMIT_SHORT_SHA.tar.xz HEAD
+git archive --format=zip -o OTB-sources-"$CI_COMMIT_SHORT_SHA".zip HEAD
+git archive --format=tgz -o OTB-sources-"$CI_COMMIT_SHORT_SHA".tar.gz HEAD
+git archive --format=tar.xz -o OTB-sources-"$CI_COMMIT_SHORT_SHA".tar.xz HEAD
 # Remove old source file
 echo "Removing old sources"
 ssh otbpush@otb5-vm2.orfeo-toolbox.org \
@@ -82,7 +67,20 @@ ${jobs_directory}/OTB-sources-*.tar.*
 
 # Push new source file
 echo "Pushing new sources"
-scp OTB-sources-$CI_COMMIT_SHORT_SHA.* \
+scp OTB-sources-"$CI_COMMIT_SHORT_SHA".* \
 otbpush@otb5-vm2.orfeo-toolbox.org:${jobs_directory}/
 
+echo "${CI_COMMIT_SHA}" > ref.sha
+echo "Pushing ref.sha"
+scp ref.sha otbpush@otb5-vm2.orfeo-toolbox.org:${jobs_directory}/
 
+#Untar doc
+if [ "$CI_COMMIT_REF_NAME" = "develop" ]
+then
+  ssh otbpush@otb5-vm2.orfeo-toolbox.org \
+  tar -xf ${jobs_directory}/CookBook-*-html.tar.gz -C ${jobs_directory}/
+  ssh otbpush@otb5-vm2.orfeo-toolbox.org \
+  rm -rf /home/otbpush/test/CookBook/*
+  ssh otbpush@otb5-vm2.orfeo-toolbox.org \
+  mv ${jobs_directory}/CookBook-*/* /home/otbpush/test/CookBook/.
+fi

CI/macos-10.11.6-clang.cmake

@@ -25,5 +25,6 @@ set(site_option
 OTB_USE_GLFW=OFF
 CMAKE_C_COMPILER_LAUNCHER:STRING=ccache
 CMAKE_CXX_COMPILER_LAUNCHER:STRING=ccache
+OPENGL_INCLUDE_DIR:STRING=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Headers
 OTB_DATA_USE_LARGEINPUT:BOOL=ON") 
 # Large input path are in an environment variable on macOS

CI/main_superbuild.cmake

@@ -39,20 +39,17 @@ if(WIN32)
   set(ENV{PATH} "${XDK_PATH_NATIVE}\\bin;$ENV{PATH}" )
   set(ENV{PATH} "$ENV{PATH};${XDK_PATH_NATIVE}\\lib" )
   set(ENV{GDAL_DATA} "${XDK_PATH_NATIVE}\\data" )
-  set(ENV{GEOTIFF_CSV} "${XDK_PATH_NATIVE}\\share\\epsg_csv" )
-  set(ENV{PROJ_LIB} "${XDK_PATH_NATIVE}\\share" )
+  set(ENV{PROJ_LIB} "${XDK_PATH_NATIVE}\\share\\proj" )
   # needed to load Qt plugins for testing, not for binary packages where we use a qt.conf file
   set(ENV{QT_PLUGIN_PATH} "${XDK_PATH_NATIVE}\\plugins")
   set( CTEST_ENVIRONMENT
 "PATH=$ENV{PATH}
 GDAL_DATA=$ENV{GDAL_DATA}
-GEOTIFF_CSV=$ENV{GEOTIFF_CSV}
 PROJ_LIB=$ENV{PROJ_LIB}
 ")
 else()
   set(ENV{PATH} "${XDK_PATH}/lib:${XDK_PATH}/bin:$ENV{PATH}" )
   set( GDAL_DATA "${XDK_PATH}/share/gdal" )
-  set( GEOTIFF_CSV "${XDK_PATH}/share/epsg_csv" )
   set( PROJ_LIB "${XDK_PATH}/share" )
   set( CTEST_ENVIRONMENT
 "PATH=$ENV{PATH}

CMake/FindGLEW.cmake

-# File from https://github.com/progschj/OpenGL-Examples/
-#
-# ----------------------------------------------------------------------------
-# Copyright (c) 2012-2013 Jakob Progsch
-# Released under ZLib license:
-#
-# This software is provided 'as-is', without any express or implied warranty.
-# In no event will the authors be held liable for any damages arising from the
-# use of this software.
-#
-# Permission is granted to anyone to use this software for any purpose,
-# including commercial applications, and to alter it and redistribute it
-# freely, subject to the following restrictions:
-#
-# 1. The origin of this software must not be misrepresented; you must not
-#    claim that you wrote the original software. If you use this software in
-#    a product, an acknowledgment in the product documentation would be
-#    appreciated but is not required.
-#
-# 2. Altered source versions must be plainly marked as such, and must not be
-#    misrepresented as being the original software.
-#
-# 3. This notice may not be removed or altered from any source distribution.
-# ----------------------------------------------------------------------------
-#
-# NOTE: This file was removed from OpenGL-Examples project on 2013-11-01:
-#       https://github.com/progschj/OpenGL-Examples/commit/a100ce1ec6f5f6acf6ba3a3279cd3b3b91775b20
-#
-# Try to find GLEW library and include path.
-# Once done this will define
-#rewritten for OTB by Rashad Kanavath
-#
-# GLEW_FOUND
-# GLEW_INCLUDE_PATH
-# GLEW_LIBRARY
-#
-
-# This whole file could be deleted. Find Packages GLEW can be used now
-find_path(
-  GLEW_INCLUDE_DIR GL/glew.h
-  DOC "The directory where GL/glew.h resides"
-  )
-
-if(WIN32)
-  set(GLEW_LIB_NAMES glew GLEW glew32 glew32s)
-else()
-  set(GLEW_LIB_NAMES libGLEW GLEW)
-endif()
-
-FIND_LIBRARY( GLEW_LIBRARY
-  NAMES ${GLEW_LIB_NAMES}
-  DOC "The GLEW library")
-
-set(GLEW_FOUND FALSE)
-if (GLEW_INCLUDE_DIR AND GLEW_LIBRARY)
-  set(GLEW_LIBRARIES ${GLEW_LIBRARY})
-  set(GLEW_FOUND TRUE)
-endif()
-
-INCLUDE(${CMAKE_ROOT}/Modules/FindPackageHandleStandardArgs.cmake)
-find_package_handle_standard_args(GLEW
-  REQUIRED_VARS GLEW_LIBRARY GLEW_INCLUDE_DIR
-  VERSION_VAR GLEW_VERSION_STRING)

CMake/FindICUUC.cmake

-#
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
-#
-# This file is part of Orfeo Toolbox
-#
-#     https://www.orfeo-toolbox.org/
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-# - Find ICUUC
-# Find the native ICUUC includes and library
-#
-#   ICUUC_FOUND        - True if ICUUC found.
-#   ICUUC_INCLUDE_DIRS - where to find unicode/unistr.h, etc.
-#   ICUUC_LIBRARIES    - List of libraries when using ICUUC.
-#
-
-if( ICUUC_INCLUDE_DIR )
-    # Already in cache, be silent
-    set( ICUUC_FIND_QUIETLY TRUE )
-endif()
-
-find_path( ICUUC_INCLUDE_DIR unicode/unistr.h )
-
-find_library( ICUUC_LIBRARY
-              NAMES icuuc )
-
-# handle the QUIETLY and REQUIRED arguments and set ICUUC_FOUND to TRUE if
-# all listed variables are TRUE
-include( FindPackageHandleStandardArgs )
-find_package_handle_standard_args( ICUUC DEFAULT_MSG ICUUC_LIBRARY ICUUC_INCLUDE_DIR )
-
-mark_as_advanced( ICUUC_INCLUDE_DIR ICUUC_LIBRARY )
-
-if(ICUUC_FOUND)
-  set(ICUUC_INCLUDE_DIRS ${ICUUC_INCLUDE_DIR})
-  set(ICUUC_LIBRARIES ${ICUUC_LIBRARY})
-else()
-  set(ICUUC_INCLUDE_DIRS)
-  set(ICUUC_LIBRARIES)
-endif()
-

CMake/FindKWStyle.cmake

-# - Finds the KWStyle utility
-# This module looks for KWStyle. If KWStyle is found,
-# the following variables are defined:
-#  KWSTYLE_FOUND - Set if KWStyle is found
-#  KWSTYLE_EXECUTABLE - Path to the KWStyle executable
-#  KWSTYLE_VERSION_STRING - A human-readable string containing the version of KWStyle
-
-#=============================================================================
-# Copyright 2008-2013 Kitware, Inc.
-# Copyright 2013 Brian Helba
-#
-# Distributed under the OSI-approved BSD License (the "License");
-# see accompanying file Copyright.txt for details.
-#
-# This software is distributed WITHOUT ANY WARRANTY; without even the
-# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the License for more information.
-#=============================================================================
-
-find_program(
-  KWSTYLE_EXECUTABLE
-  NAMES KWStyle
-  DOC "Path to the KWStyle executable"
-  )
-mark_as_advanced(KWSTYLE_EXECUTABLE)
-
-if(KWSTYLE_EXECUTABLE)
-  execute_process(
-    COMMAND ${KWSTYLE_EXECUTABLE} -version
-    OUTPUT_VARIABLE KWSTYLE_VERSION_STRING
-    ERROR_QUIET
-    OUTPUT_STRIP_TRAILING_WHITESPACE
-    )
-  if(KWSTYLE_VERSION_STRING)
-    # string(REPLACE ..) fails if the input is an empty string
-    string(REPLACE
-      "Version: "
-      ""
-      KWSTYLE_VERSION_STRING
-      ${KWSTYLE_VERSION_STRING}
-      )
-  else(KWSTYLE_VERSION_STRING)
-    # CMake's find_package_handle_standard_args has a bug where the
-    # version empty string ("") is always acceptable
-    set(KWSTYLE_VERSION_STRING "?")
-  endif(KWSTYLE_VERSION_STRING)
-endif(KWSTYLE_EXECUTABLE)
-
-include(FindPackageHandleStandardArgs)
-find_package_handle_standard_args(
-  KWStyle
-  REQUIRED_VARS KWSTYLE_EXECUTABLE
-  VERSION_VAR KWSTYLE_VERSION_STRING
-  )

CMake/FindLTDL.cmake

-#
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
-#
-# This file is part of Orfeo Toolbox
-#
-#     https://www.orfeo-toolbox.org/
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-# - Find LTDL
-# Find the native LTDL includes and library
-#
-#   LTDL_FOUND        - True if LTDL found.
-#   LTDL_INCLUDE_DIRS - where to find ltdl.h, etc.
-#   LTDL_LIBRARIES    - List of libraries when using LTDL.
-#
-
-if( LTDL_INCLUDE_DIR )
-    # Already in cache, be silent
-    set( LTDL_FIND_QUIETLY TRUE )
-endif()
-
-find_path( LTDL_INCLUDE_DIR ltdl.h )
-
-find_library( LTDL_LIBRARY
-              NAMES ltdl )
-
-# handle the QUIETLY and REQUIRED arguments and set LTDL_FOUND to TRUE if
-# all listed variables are TRUE
-include( FindPackageHandleStandardArgs )
-find_package_handle_standard_args( LTDL DEFAULT_MSG LTDL_LIBRARY LTDL_INCLUDE_DIR )
-
-mark_as_advanced( LTDL_INCLUDE_DIR LTDL_LIBRARY )
-
-if(LTDL_FOUND)
-  set(LTDL_INCLUDE_DIRS ${LTDL_INCLUDE_DIR})
-  set(LTDL_LIBRARIES ${LTDL_LIBRARY})
-else()
-  set(LTDL_INCLUDE_DIRS)
-  set(LTDL_LIBRARIES)
-endif()
-

CMake/FindMercurial.cmake

-#
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
-#
-# This file is part of Orfeo Toolbox
-#
-#     https://www.orfeo-toolbox.org/
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-# - Extract information from a mercurial working copy
-
-# Example usage:
-#  find_package(Mercurial)
-#  if(Mercurial_FOUND)
-#    Mercurial_WC_IDENTIFY(${PROJECT_SOURCE_DIR} Project)
-#    message("Current revision is ${Project_WC_REVISION}")
-#    message("Mercurial version is ${Mercurial_VERSION_HG}")
-#  endif()
-
-# This file can be deleted  as we no longer use mercurial
-set(Mercurial_FOUND FALSE)
-set(Mercurial_HG_FOUND FALSE)
-
-find_program(Mercurial_HG_EXECUTABLE hg
-  DOC "mercurial command line client")
-mark_as_advanced(Mercurial_HG_EXECUTABLE)
-
-if(Mercurial_HG_EXECUTABLE)
-  set(Mercurial_HG_FOUND TRUE)
-  set(Mercurial_FOUND TRUE)
-
-  macro(Mercurial_WC_IDENTIFY dir prefix)
-    # the subversion commands should be executed with the C locale, otherwise
-    # the message (which are parsed) may be translated, Alex
-    set(_Mercurial_SAVED_LC_ALL "$ENV{LC_ALL}")
-    set(ENV{LC_ALL} C)
-    execute_process(COMMAND ${Mercurial_HG_EXECUTABLE} version
-      WORKING_DIRECTORY ${dir}
-      OUTPUT_VARIABLE Mercurial_VERSION_HG
-      OUTPUT_STRIP_TRAILING_WHITESPACE ERROR_QUIET)
-
-    execute_process(COMMAND ${Mercurial_HG_EXECUTABLE} identify ${dir}
-      OUTPUT_VARIABLE ${prefix}_WC_IDENTIFY
-#      ERROR_VARIABLE Mercurial_hg_identify_error
-#      RESULT_VARIABLE Mercurial_hg_identify_result
-      OUTPUT_STRIP_TRAILING_WHITESPACE ERROR_QUIET)
-
-    execute_process(COMMAND ${Mercurial_HG_EXECUTABLE} status -m ${dir}
-      OUTPUT_VARIABLE ${prefix}_WC_STATUS
-#      ERROR_VARIABLE Mercurial_hg_status_error
-#      RESULT_VARIABLE Mercurial_hg_status_result
-      OUTPUT_STRIP_TRAILING_WHITESPACE ERROR_QUIET)
-
-    if(NOT ${Mercurial_hg_identify_result} EQUAL 0)
-      message(SEND_ERROR "Command \"${Mercurial_HG_EXECUTABLE} identify ${dir}\" failed with output:\n${Mercurial_hg_identify_error}")
-    else()
-
-      string(REGEX REPLACE "^(.*\n)?Mercurial Distributed SCM [(]version ([.0-9]+).*"
-        "\\2" Mercurial_VERSION_HG "${Mercurial_VERSION_HG}")
-      string(REGEX REPLACE "^(.*\n)?([0-9a-f]+).*"
-        "\\2" ${prefix}_WC_REVISION "${${prefix}_WC_IDENTIFY}")
-
-    endif()
-
-    # restore the previous LC_ALL
-    set(ENV{LC_ALL} ${_Mercurial_SAVED_LC_ALL})
-
-  endmacro()
-
-
-
-endif()
-
-
-
-if(NOT Mercurial_FOUND)
-  if(NOT Mercurial_FIND_QUIETLY)
-    message(STATUS "Mercurial was not found.")
-  else()
-    if(Mercurial_FIND_REQUIRED)
-      message(FATAL_ERROR "Mercurial was not found.")
-    endif()
-  endif()
-endif()

CMake/FindOpenCV.cmake

@@ -21,9 +21,9 @@
 set(OPENCV_SEARCH_PATH)
 
 if(OpenCV_DIR)
-  get_filename_component(OPENCV_SEARCH_PATH "${OpenCV_DIR}" PATH)
+  get_filename_component(OPENCV_SEARCH_PATH "${OpenCV_DIR}" REALPATH)
   if(OPENCV_SEARCH_PATH)
-    get_filename_component(OPENCV_SEARCH_PATH "${OPENCV_SEARCH_PATH}" PATH)
+    get_filename_component(OPENCV_SEARCH_PATH "${OPENCV_SEARCH_PATH}" REALPATH)
   endif()
   if(OPENCV_SEARCH_PATH)
     find_path(

CMake/FindOpenThreads.cmake

-# OpenThreads is a C++ based threading library. Its largest userbase
-# seems to OpenSceneGraph so you might notice I accept OSGDIR as an
-# environment path.
-# I consider this part of the Findosg* suite used to find OpenSceneGraph
-# components.
-# Each component is separate and you must opt in to each module.
-#
-# Locate OpenThreads
-# This module defines
-# OPENTHREADS_LIBRARIES
-# OPENTHREADS_FOUND, if false, do not try to link to OpenThreads
-# OPENTHREADS_INCLUDE_DIRS, where to find the headers
-# OPENTHREADS_VERSION        - version string
-# OPENTHREADS_VERSION_MAJOR  - version major number
-# OPENTHREADS_VERSION_MINOR  - version minor number
-# OPENTHREADS_VERSION_PATCH  - version patch number
-# OPENTHREADS_VERSION_NUMBER - version number ((major*100)+minor)*100+patch
-#
-# $OPENTHREADS_DIR is an environment variable that would
-# correspond to the ./configure --prefix=$OPENTHREADS_DIR
-# used in building osg.
-#
-# Created by Eric Wing.
-# Modified by Guillaume Pasero.
-
-#=============================================================================
-# Copyright 2007-2009 Kitware, Inc.
-# Copyright 2009-2017 Centre National d'Etudes Spatiales (CNES)
-#
-# Distributed under the OSI-approved BSD License (the "License");
-# see accompanying file Copyright.txt for details.
-#
-# This software is distributed WITHOUT ANY WARRANTY; without even the
-# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the License for more information.
-#=============================================================================
-# (To distribute this file outside of CMake, substitute the full
-#  License text for the above reference.)
-
-# Header files are presumed to be included like
-# #include <OpenThreads/Thread>
-
-# To make it easier for one-step automated configuration/builds,
-# we leverage environmental paths. This is preferable
-# to the -DVAR=value switches because it insulates the
-# users from changes we may make in this script.
-# It also offers a little more flexibility than setting
-# the CMAKE_*_PATH since we can target specific components.
-# However, the default CMake behavior will search system paths
-# before anything else. This is problematic in the cases
-# where you have an older (stable) version installed, but
-# are trying to build a newer version.
-# CMake doesn't offer a nice way to globally control this behavior
-# so we have to do a nasty "double FIND_" in this module.
-# The first FIND disables the CMAKE_ search paths and only checks
-# the environmental paths.
-# If nothing is found, then the second find will search the
-# standard install paths.
-# Explicit -DVAR=value arguments should still be able to override everything.
-
-# This whole file could be deleted. Find Packages OpenThreads can be used now
-find_path(
-  OPENTHREADS_INCLUDE_DIR OpenThreads/Thread
-  PATH_SUFFIXES include
-)
-mark_as_advanced(OPENTHREADS_INCLUDE_DIR)
-
-if(EXISTS "${OPENTHREADS_INCLUDE_DIR}/OpenThreads/Version")
-  file(READ "${OPENTHREADS_INCLUDE_DIR}/OpenThreads/Version" _openthreads_version_CONTENTS)
-  string(REGEX REPLACE ".*# *define +OPENTHREADS_MAJOR_VERSION +([0-9]+).*" "\\1" OPENTHREADS_VERSION_MAJOR "${_openthreads_version_CONTENTS}")
-  string(REGEX REPLACE ".*# *define +OPENTHREADS_MINOR_VERSION +([0-9]+).*" "\\1" OPENTHREADS_VERSION_MINOR "${_openthreads_version_CONTENTS}")
-  string(REGEX REPLACE ".*# *define +OPENTHREADS_PATCH_VERSION +([0-9]+).*" "\\1" OPENTHREADS_VERSION_PATCH "${_openthreads_version_CONTENTS}")
-
-  set(OPENTHREADS_VERSION "${OPENTHREADS_VERSION_MAJOR}.${OPENTHREADS_VERSION_MINOR}.${OPENTHREADS_VERSION_PATCH}")
-  math(EXPR OPENTHREADS_VERSION_NUMBER
-    "((${OPENTHREADS_VERSION_MAJOR})*100+${OPENTHREADS_VERSION_MINOR})*100+${OPENTHREADS_VERSION_PATCH}")
-else()
-  if(NOT OPENTHREADS_FIND_QUIETLY)
-  message(WARNING "OpenThreads/Version not found !")
-  endif()
-endif()
-
-find_library(OPENTHREADS_LIBRARY
-    NAMES OpenThreads OpenThreadsWin32
-    PATH_SUFFIXES lib64 lib
-)
-mark_as_advanced(OPENTHREADS_LIBRARY)
-
-find_library(OPENTHREADS_LIBRARY_DEBUG
-    NAMES OpenThreadsd OpenThreadsWin32d
-    PATH_SUFFIXES lib64 lib
-)
-mark_as_advanced(OPENTHREADS_LIBRARY_DEBUG)
-
-include(FindPackageHandleStandardArgs)
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(OpenThreads DEFAULT_MSG
-    OPENTHREADS_LIBRARY OPENTHREADS_INCLUDE_DIR)
-
-if(OPENTHREADS_LIBRARY_DEBUG)
-    set(OPENTHREADS_LIBRARIES
-        optimized ${OPENTHREADS_LIBRARY}
-        debug ${OPENTHREADS_LIBRARY_DEBUG})
-else()
-    set(OPENTHREADS_LIBRARIES ${OPENTHREADS_LIBRARY})
-endif()
-
-set(OPENTHREADS_INCLUDE_DIRS ${OPENTHREADS_INCLUDE_DIR})

CMake/MinGWPackage.cmake

-#
-# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
-#
-# This file is part of Orfeo Toolbox
-#
-#     https://www.orfeo-toolbox.org/
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-macro(package_mingw)
-  cmake_parse_arguments(PACKAGE  "" "PREFIX_DIR;ARCH;MXEROOT;WITH_OTBGUI" "SEARCHDIRS;PEFILES" ${ARGN} )
-
-  list(APPEND PACKAGE_PEFILES ${CMAKE_INSTALL_PREFIX}/bin/otbApplicationLauncherCommandLine.exe)
-  list(APPEND PACKAGE_PEFILES ${CMAKE_INSTALL_PREFIX}/bin/otbTestDriver.exe)
-  if(PACKAGE_WITH_OTBGUI)
-    list(APPEND PACKAGE_PEFILES ${CMAKE_INSTALL_PREFIX}/bin/otbApplicationLauncherQt.exe)
-  endif()
-
-  if("${PACKAGE_ARCH}" STREQUAL "x86")
-    set(MXE_BIN_DIR "${PACKAGE_MXEROOT}/usr/i686-w64-mingw32.shared/bin")
-    set(MXE_OBJDUMP "${PACKAGE_MXEROOT}/usr/bin/i686-w64-mingw32.shared-objdump")
-  elseif("${PACKAGE_ARCH}" STREQUAL "x64")
-    set(MXE_BIN_DIR "${PACKAGE_MXEROOT}/usr/x86_64-w64-mingw32.shared/bin")
-    set(MXE_OBJDUMP "${PACKAGE_MXEROOT}/usr/bin/x86_64-w64-mingw32.shared-objdump")
-  endif()
-
-  file(GLOB MXE_GCC_LIB_DIR "${MXE_BIN_DIR}/gcc*")
-  list(APPEND PACKAGE_SEARCHDIRS ${MXE_GCC_LIB_DIR})
-  list(APPEND PACKAGE_SEARCHDIRS ${MXE_BIN_DIR})
-  list(APPEND PACKAGE_SEARCHDIRS "${MXE_BIN_DIR}/../qt/bin") #Qt
-  list(APPEND PACKAGE_SEARCHDIRS "${MXE_BIN_DIR}/../qt/lib") #Qwt
-  list(APPEND PACKAGE_SEARCHDIRS "${CMAKE_INSTALL_PREFIX}/bin") #mvd
-  list(APPEND PACKAGE_SEARCHDIRS "${CMAKE_INSTALL_PREFIX}/lib/otb/applications") #otb apps
-
-  install_common(${PACKAGE_WITH_OTBGUI})
-
-  file(GLOB otbapps_list ${CMAKE_INSTALL_PREFIX}/lib/otb/applications/otbapp_*dll) # /lib/otb
-  list(APPEND PACKAGE_PEFILES ${otbapps_list})
-
-  set(alldlls)
-  set(notfound_dlls)
-  foreach(infile ${PACKAGE_PEFILES})
-    get_filename_component(bn ${infile} NAME)
-    process_deps(${bn})
-  endforeach()
-
-  list(LENGTH notfound_dlls nos)
-  if(${nos} GREATER 0)
-    STRING(REPLACE ".dll" ".dll," notfound ${notfound_dlls})
-    message(FATAL_ERROR "Following dlls were not found: ${notfound}
-                   Please consider adding their paths to SEARCHDIRS when calling package_mingw macro.")
-  endif()
-
-endmacro(package_mingw)
-
-set(SYSTEM_DLLS
-  msvc.*dll
-  user32.dll
-  gdi32.dll
-  shell32.dll
-  kernel32.dll
-  advapi32.dll
-  crypt32.dll
-  ws2_32.dll
-  wldap32.dll
-  ole32.dll
-  opengl32.dll
-  glu32.dll
-  comdlg32.dll
-  imm32.dll
-  oleaut32.dll
-  comctl32.dll
-  winmm.dll
-  shfolder.dll
-  secur32.dll
-  wsock32.dll
-  winspool.drv)
-
-macro(is_system_dll matched value)
-  set(${matched})
-  string(TOLOWER ${value} value_)
-  foreach (pattern ${SYSTEM_DLLS})
-    string(TOLOWER ${pattern} pattern_)
-    if(${value_} MATCHES ${pattern_})
-      set(${matched} TRUE)
-    endif()
-  endforeach()
-endmacro()
-
-macro(list_contains var value)
-  set(${var})
-  foreach(value2 ${ARGN})
-    if(${value} STREQUAL ${value2})
-      set(${var} TRUE)
-    endif()
-  endforeach(value2)
-endmacro()
-
-function(process_deps infile)
-  get_filename_component(bn ${infile} NAME)
-  list_contains(contains "${bn}" "${alldlls}")
-  if(NOT contains)
-    set(DLL_FOUND FALSE)
-    foreach(SEARCHDIR ${PACKAGE_SEARCHDIRS})
-      if(NOT DLL_FOUND)
-        if(EXISTS ${SEARCHDIR}/${infile})
-          set(DLL_FOUND TRUE)
-        else()
-          string(TOLOWER ${infile} infile_lower)
-          if(EXISTS ${SEARCHDIR}/${infile_lower})
-            set(DLL_FOUND TRUE)
-            set(infile ${infile_lower})
-          endif()
-        endif()
-        if(DLL_FOUND)
-          message(STATUS "Processing ${SEARCHDIR}/${infile}")
-          if(NOT "${infile}" MATCHES "otbapp")
-            install(FILES "${SEARCHDIR}/${infile}"
-              DESTINATION ${PACKAGE_PREFIX_DIR}/bin)
-          else()
-            ##message(STATUS "skipping..${infile}")
-          endif()
-          if(NOT EXISTS ${MXE_OBJDUMP})
-            message(FATAL_ERROR "objdump executable not found. please check MXE_OBJDUMP is set to correct cross compiled executable")
-          endif()
-          execute_process(COMMAND ${MXE_OBJDUMP} "-p" "${SEARCHDIR}/${infile}"  OUTPUT_VARIABLE dlldeps)
-          string(REGEX MATCHALL "DLL.Name..[A-Za-z(0-9\\.0-9)+_\\-]*" OUT "${dlldeps}")
-          string(REGEX REPLACE "DLL.Name.." "" OUT "${OUT}")
-          foreach(o ${OUT})
-            process_deps(${o})
-          endforeach()
-        endif()
-      endif(NOT DLL_FOUND)
-    endforeach()
-
-    if(NOT DLL_FOUND)
-      is_system_dll(iss "${infile}")
-      if(NOT iss)
-        set(notfound_dlls "${notfound_dlls};${infile}")
-      endif()
-    else(NOT DLL_FOUND)
-
-      set( alldlls "${alldlls};${bn}" PARENT_SCOPE )
-    endif(NOT DLL_FOUND)
-
-    set(notfound_dlls "${notfound_dlls}" PARENT_SCOPE )
-   endif()
-endfunction()
-
-function(install_common with_otbgui)
-  set(APP_PREFIX_DIR "${PACKAGE_PREFIX_DIR}")
-  set(APP_BIN_DIR "${APP_PREFIX_DIR}/bin")
-  set(APP_OTBLIBS_DIR "${APP_PREFIX_DIR}/lib/otb")
-  set(APP_DATA_DIR "${APP_PREFIX_DIR}/share")
-
-  ####################### install GDAL data #######################
-
-  set(GDAL_DATA ${MXE_BIN_DIR}/../share/gdal)
-  if(NOT EXISTS "${GDAL_DATA}/epsg.wkt")
-    message(FATAL_ERROR "Cannot generate package without GDAL_DATA : ${GDAL_DATA}")
-  endif()
-
-  install(
-    DIRECTORY ${GDAL_DATA}
-    DESTINATION ${APP_DATA_DIR})
-
-  ####################### Check otb applications #######################
-
-  file(GLOB OTB_APPS_LIST ${CMAKE_INSTALL_PREFIX}/lib/otb/applications/otbapp_*dll) # /lib/otb
-  if(NOT OTB_APPS_LIST)
-    message(FATAL_ERROR "No OTB-applications detected")
-  endif()
-
-  ## otb apps dir /lib/otb/applications
-  install(
-    DIRECTORY "${CMAKE_INSTALL_PREFIX}/lib/otb/applications"
-    DESTINATION ${APP_OTBLIBS_DIR})
-
-  file(GLOB CLI_SCRIPTS ${CMAKE_INSTALL_PREFIX}/bin/otbcli*)
-  foreach(CLI_SCRIPT ${CLI_SCRIPTS})
-    install(
-      FILES "${CLI_SCRIPT}"
-      DESTINATION ${APP_BIN_DIR})
-  endforeach()
-
-  if(with_otbgui)
-    file(GLOB GUI_SCRIPTS ${CMAKE_INSTALL_PREFIX}/bin/otbgui*)
-    foreach(GUI_SCRIPT ${GUI_SCRIPTS})
-      install(
-        FILES "${GUI_SCRIPT}"
-        DESTINATION ${APP_BIN_DIR})
-    endforeach()
-  endif()
-
-
-endfunction()

CMake/OTBModuleEnablement.cmake

@@ -247,100 +247,6 @@ foreach(otb-module ${OTB_MODULES_ALL})
   endif()
 endforeach()
 
-#-----------------------------------------------------------------------------
-# Construct an in-build-order list of "CDash subproject" modules from the
-# list of enabled modules:
-
-set(OTB_CDASH_SUBPROJECT_MODULES)
-
-if(OTB_GENERATE_PROJECT_XML OR OTB_GENERATE_SUBPROJECTS_CMAKE)
-  # Since a "CDash subproject" for OTB logically contains both a non-test
-  # module and its corresponding test module, the subproject order must take
-  # both modules into account. The subprojects in this list are named after
-  # the non-test modules in the enabled modules list. But the ordering of
-  # these subprojects use the dependencies of the modules *and* their test
-  # modules
-  foreach(module ${OTB_MODULES_ENABLED})
-    if(${module}_TESTED_BY)
-      # module that HAS a test module: skip for now... will be added as a
-      # subproject later, in the slot when its corresponding "-test" module
-      # is encountered
-    elseif(${module}_TESTS_FOR)
-      # this is a test module... *now* list the module which it tests as
-      # the subproject name:
-      list(APPEND OTB_CDASH_SUBPROJECT_MODULES ${${module}_TESTS_FOR})
-    else()
-      # a module that is not a test module, and has no tested by...
-      # is just a module-only subproject with no test module:
-      list(APPEND OTB_CDASH_SUBPROJECT_MODULES ${module})
-    endif()
-  endforeach()
-endif()
-
-#-----------------------------------------------------------------------------
-# Write a Project.xml file to send the description of the submodules and
-# their dependencies up to CDash:
-
-if(OTB_GENERATE_PROJECT_XML)
-  set(filename "${OTB_BINARY_DIR}/${main_project_name}.Project.xml")
-
-  set(xml "<?xml version='1.0' encoding='UTF-8'?>\n")
-  set(xml "${xml}<Project name='${main_project_name}'>\n")
-  foreach(module ${OTB_CDASH_SUBPROJECT_MODULES})
-    if(${module}_IS_TEST)
-      message(FATAL_ERROR "unexpected: subproject names should not be test modules module='${module}' tests_for='${${module}_TESTS_FOR}'")
-    endif()
-    set(xml "${xml}  <SubProject name='${module}'>\n")
-    set(deps "")
-    set(dep_list ${OTB_MODULE_${module}_DEPENDS})
-    if(${module}_TESTED_BY)
-      list(APPEND dep_list ${OTB_MODULE_${${module}_TESTED_BY}_DEPENDS})
-      if(dep_list)
-        list(SORT dep_list)
-      endif()
-    endif()
-    foreach(dep ${dep_list})
-      if(NOT ${dep}_IS_TEST AND NOT "${module}" STREQUAL "${dep}")
-        set(xml "${xml}    <Dependency name='${dep}'/>\n")
-      endif()
-    endforeach()
-    set(xml "${xml}  </SubProject>\n")
-  endforeach()
-  set(xml "${xml}</Project>\n")
-
-  # Always write out "${filename}.in":
-  file(WRITE ${filename}.in "${xml}")
-
-  # Use configure_file so "${filename}" only changes when its content changes:
-  configure_file(${filename}.in ${filename} COPYONLY)
-endif()
-
-#-----------------------------------------------------------------------------
-# Write the list of enabled modules out for ctest scripts to use as an
-# in-order subproject list:
-
-if(OTB_GENERATE_SUBPROJECTS_CMAKE)
-  set(filename "${OTB_BINARY_DIR}/${main_project_name}.SubProjects.cmake")
-
-  set(s "# Generated by CMake, do not edit!\n")
-  set(s "${s}set(otb_subprojects\n")
-  foreach(otb-module ${OTB_CDASH_SUBPROJECT_MODULES})
-    if(${otb-module}_IS_TEST)
-      message(FATAL_ERROR "unexpected: subproject names should not be test modules otb-module='${otb-module}' tests_for='${${otb-module}_TESTS_FOR}'")
-    endif()
-    set(s "${s}  \"${otb-module}\"\n")
-  endforeach()
-  set(s "${s})\n")
-
-  # Always write out "${filename}.in":
-  file(WRITE ${filename}.in "${s}")
-
-  # Use configure_file so "${filename}" only changes when its content changes:
- configure_file(${filename}.in ${filename} COPYONLY)
-endif()
-
-#-----------------------------------------------------------------------------
-
 if(NOT OTB_MODULES_ENABLED)
   message(WARNING "No modules enabled!")
   file(REMOVE "${OTB_BINARY_DIR}/OTBTargets.cmake")