Commit 1580c095 authored by Nicholas Breen's avatar Nicholas Breen

patches/31_manpages.dpatch: add a few fixes; rules: update a comment

parent 4fed5f5b
......@@ -5,8 +5,9 @@ gromacs (4.5.5-1) unstable; urgency=low
- man/g_dos.1: Create man page for new binary.
* rules: Add build-arch/build-indep targets. Add preliminary support for
building GPU-accelerated binaries: set DEB_BUILD_OPTIONS=gpu to try it.
* patches/31_manpages.dpatch: Update.
-- Nicholas Breen <nbreen@ofb.net> Wed, 21 Sep 2011 15:26:14 -0700
-- Nicholas Breen <nbreen@ofb.net> Wed, 21 Sep 2011 19:10:08 -0700
gromacs (4.5.4-2) unstable; urgency=low
......
......@@ -77,3 +77,39 @@ diff -Nru gromacs-4.5.4.orig/man/man1/g_wham.1 gromacs-4.5.4/man/man1/g_wham.1
\&reaction coordinate with a Gaussian (sigma provided with \fB \-acsig\fR,
\&see output in \fB iact.xvg\fR). Note that the IACTs are estimated by simple
\&integration of the ACFs while the ACFs are larger 0.05.
diff -Nru gromacs-4.5.5.orig//src/kernel/hizzie.c gromacs-4.5.5//src/kernel/hizzie.c
--- gromacs-4.5.5.orig//src/kernel/hizzie.c 2011-09-21 05:34:32.000000000 -0700
+++ gromacs-4.5.5//src/kernel/hizzie.c 2011-09-21 18:49:32.291850466 -0700
@@ -211,7 +211,7 @@
/* A histidine residue exists that requires automated assignment, so
* doing the analysis of donors and acceptors is worthwhile. */
fprintf(stderr,
- "Analysing hydrogen-bonding network for automated assigment of histidine\n"
+ "Analysing hydrogen-bonding network for automated assignment of histidine\n"
" protonation.");
snew(donor,natom);
diff -Nru gromacs-4.5.5.orig//src/kernel/readir.c gromacs-4.5.5//src/kernel/readir.c
--- gromacs-4.5.5.orig//src/kernel/readir.c 2011-09-21 18:01:47.814687957 -0700
+++ gromacs-4.5.5//src/kernel/readir.c 2011-09-21 18:49:53.900080215 -0700
@@ -924,7 +924,7 @@
EETYPE("DispCorr", ir->eDispCorr, edispc_names);
CTYPE ("Extension of the potential lookup tables beyond the cut-off");
RTYPE ("table-extension", ir->tabext, 1.0);
- CTYPE ("Seperate tables between energy group pairs");
+ CTYPE ("Separate tables between energy group pairs");
STYPE ("energygrp_table", egptable, NULL);
CTYPE ("Spacing for the PME/PPPM FFT grid");
RTYPE ("fourierspacing", opts->fourierspacing,0.12);
diff -Nru gromacs-4.5.5.orig//src/tools/gmx_genpr.c gromacs-4.5.5//src/tools/gmx_genpr.c
--- gromacs-4.5.5.orig//src/tools/gmx_genpr.c 2011-09-21 18:01:47.814687957 -0700
+++ gromacs-4.5.5//src/tools/gmx_genpr.c 2011-09-21 18:49:03.063538595 -0700
@@ -134,7 +134,7 @@
nfn = opt2fn_null("-n",NFILE,fnm);
if (( nfn == NULL ) && ( xfn == NULL))
- gmx_fatal(FARGS,"no index file and no structure file suplied");
+ gmx_fatal(FARGS,"no index file and no structure file supplied");
if ((disre_frac < 0) || (disre_frac >= 1))
gmx_fatal(FARGS,"disre_frac should be between 0 and 1");
......@@ -189,14 +189,13 @@ install-basic: build
dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1
# this program is currently broken - keep it from shipping until fixed
rm $(CURDIR)/debian/gromacs/usr/bin/g_pme_error $(CURDIR)/debian/gromacs/usr/bin/g_pme_error_d
# three lintian warnings are overridden:
# two lintian warnings are overridden:
# - package-name-doesnt-match-sonames: the libraries are private to
# GROMACS, and it's unlikely that any new package will start using
# them; therefore, separate lib packages would just be bloat.
# This is also overridden for the -mpich and -openmpi packages.
# - shlib-with-executable-stack: it's a side effect of the ASM inner
# loops (i386/amd64 only)
# - binary-without-manpage: shipped in gromacs-data instead.
dh_lintian -pgromacs
install-mpich: build
......
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