Commit bb7ed95f authored by Nicholas Breen's avatar Nicholas Breen

Update lintian overrides & prepare for upload

parent bde3f672
gromacs (5.1-1) UNRELEASED; urgency=low
gromacs (5.1-1) unstable; urgency=low
* New upstream release. This release completes the transition to "gmx"
as the sole binary to replace all the former g_* commands, and the
compatibility symlinks have been removed.
compatibility symlinks have been removed. Standalone mdrun_mpi
programs in gromacs-mpich and gromacs-openmpi are unaffected.
- gmx anadock no longer crashes on invalid input. (Closes: #715934)
* Some package reshuffling: gromacs-dev becomes libgromacs-dev, and the
shared library gets split out into libgromacs0. (Closes: #797744)
shared library gets split out into libgromacs1. (Closes: #797744)
Upload priority set to "low" due to the unusually extensive restructure.
* Remove gromacs-dev.preinst, only needed for upgrades from well before
the version in squeeze.
......@@ -12,8 +14,10 @@ gromacs (5.1-1) UNRELEASED; urgency=low
output for developer use is included. Several Build-Depends-Indep
entries added to support this.
- patches/manpage-hyphenation.patch removed, no longer needed.
- mdrun_mpi.{mpich,openmpi}.1 updated.
* debian/control: apply wrap-and-sort.
-- Nicholas Breen <nbreen@debian.org> Sat, 26 Sep 2015 15:07:40 -0700
-- Nicholas Breen <nbreen@debian.org> Thu, 01 Oct 2015 17:38:08 -0700
gromacs (5.0.6-1) unstable; urgency=medium
......
......@@ -3,8 +3,27 @@ Section: science
Priority: extra
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders: Nicholas Breen <nbreen@debian.org>
Build-Depends: debhelper (>= 7.0.0), libfftw3-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.2.4-5) [alpha amd64 arm64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 mips mips64 mips64el mipsel powerpc powerpcspe ppc64 ppc64el sparc sparc64], libx11-dev, zlib1g-dev, libgsl0-dev, libxml2-dev, libblas-dev, liblapack-dev, libboost-dev, cmake
Build-Depends-Indep: doxygen, graphviz, imagemagick, mscgen, python-sphinx, texlive-latex-base
Build-Depends: cmake,
debhelper (>= 7.0.0),
libblas-dev,
libboost-dev,
libfftw3-dev,
libgsl0-dev,
liblapack-dev,
libmpich-dev (>= 3.0.4-6),
libopenmpi-dev (>= 1.2.4-5) [alpha amd64 arm64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 mips mips64 mips64el mipsel powerpc powerpcspe ppc64 ppc64el sparc sparc64],
libx11-dev,
libxml2-dev,
zlib1g-dev
Build-Depends-Indep: doxygen,
ghostscript,
graphviz,
imagemagick,
mscgen,
python-sphinx,
texlive-fonts-recommended,
texlive-latex-base,
texlive-latex-extra
Standards-Version: 3.9.6
Homepage: http://www.gromacs.org/
Vcs-Browser: http://anonscm.debian.org/viewvc/debichem/
......@@ -12,7 +31,7 @@ Vcs-Svn: svn://anonscm.debian.org/debichem/unstable/gromacs/
Package: gromacs
Architecture: any
Depends: gromacs-data (= ${source:Version}), ${shlibs:Depends}, ${misc:Depends}
Depends: gromacs-data (= ${source:Version}), ${misc:Depends}, ${shlibs:Depends}
Recommends: cpp
Suggests: pymol
Description: Molecular dynamics simulator, with building and analysis tools
......@@ -51,7 +70,7 @@ Description: GROMACS molecular dynamics sim, data and documentation
Package: libgromacs1
Architecture: any
Section: libs
Depends: ${shlibs:Depends}, ${misc:Depends}
Depends: ${misc:Depends}, ${shlibs:Depends}
Breaks: gromacs (<< 5.1-1~)
Description: GROMACS molecular dynamics sim, shared libraries
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate
......@@ -69,9 +88,15 @@ Description: GROMACS molecular dynamics sim, shared libraries
Package: libgromacs-dev
Architecture: any
Section: libdevel
Depends: ${shlibs:Depends}, libgromacs1 (= ${binary:Version}), fftw3-dev, ${misc:Depends}
Depends: fftw3-dev,
libgromacs1 (= ${binary:Version}),
${misc:Depends},
${shlibs:Depends}
Recommends: gromacs-data
Suggests: gromacs-mpich (= ${binary:Version}) | gromacs-openmpi (= ${binary:Version}) [alpha amd64 arm64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 mips mips64 mips64el mipsel powerpc powerpcspe ppc64 ppc64el sparc sparc64], libmpich-dev, libx11-dev, zlib1g-dev
Suggests: gromacs-mpich (= ${binary:Version}) | gromacs-openmpi (= ${binary:Version}) [alpha amd64 arm64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 mips mips64 mips64el mipsel powerpc powerpcspe ppc64 ppc64el sparc sparc64],
libmpich-dev,
libx11-dev,
zlib1g-dev
Replaces: gromacs-dev (<< 5.1-1~)
Breaks: gromacs-dev (<< 5.1-1~)
Description: GROMACS molecular dynamics sim, development kit
......@@ -99,7 +124,7 @@ Description: Dummy package for libgromacs-dev
Package: gromacs-mpich
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, mpich
Depends: mpich, ${misc:Depends}, ${shlibs:Depends}
Recommends: gromacs
Suggests: gromacs-data
Replaces: gromacs-dev (<< 4.6.3-3~)
......@@ -121,10 +146,10 @@ Description: Molecular dynamics sim, binaries for MPICH parallelization
Package: gromacs-openmpi
Architecture: alpha amd64 arm64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 mips mips64 mips64el mipsel powerpc powerpcspe ppc64 ppc64el sparc sparc64
Depends: ${shlibs:Depends}, ${misc:Depends}, openmpi-bin (>= 1.2.3)
Depends: openmpi-bin (>= 1.2.3), ${misc:Depends}, ${shlibs:Depends}
Recommends: gromacs
Suggests: gromacs-data
Replaces: gromacs-lam, gromacs-dev (<< 4.6.3-3~)
Replaces: gromacs-dev (<< 4.6.3-3~), gromacs-lam
Breaks: gromacs-dev (<< 4.6.3-3~)
Description: Molecular dynamics sim, binaries for OpenMPI parallelization
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate
......
# Adaptive Resolution Molecular Dynamics Simulation
gromacs-mpich: spelling-error-in-binary usr/bin/mdrun_mpi.mpich AdResS Address
gromacs-mpich: spelling-error-in-binary usr/bin/mdrun_mpi_d.mpich AdResS Address
# Not sure where it gets this from. No hits from grep -rw.
gromacs-mpich: spelling-error-in-binary usr/bin/mdrun_mpi.mpich ment meant
gromacs-mpich: spelling-error-in-binary usr/bin/mdrun_mpi_d.mpich ment meant
# Adaptive Resolution Molecular Dynamics Simulation
gromacs-openmpi: spelling-error-in-binary usr/bin/mdrun_mpi.openmpi AdResS Address
gromacs-openmpi: spelling-error-in-binary usr/bin/mdrun_mpi_d.openmpi AdResS Address
# Not sure where it gets this from. No hits from grep -rw.
gromacs-openmpi: spelling-error-in-binary usr/bin/mdrun_mpi.openmpi ment meant
gromacs-openmpi: spelling-error-in-binary usr/bin/mdrun_mpi_d.openmpi ment meant
......@@ -2,3 +2,7 @@ no-symbols-control-file
# Adaptive Resolution Molecular Dynamics Simulation
spelling-error-in-binary usr/lib/*/libgromacs.so.* AdResS Address
spelling-error-in-binary usr/lib/*/libgromacs_d.so.* AdResS Address
# Not sure where it gets this from. No hits from grep -rw.
spelling-error-in-binary usr/lib/*/libgromacs.so.* ment meant
spelling-error-in-binary usr/lib/*/libgromacs_d.so.* ment meant
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment