Commit 29acb93a authored by Dirk Eddelbuettel's avatar Dirk Eddelbuettel

Import Upstream version 2.10.0

parent 9f9ed6ee

Too many changes to show.

To preserve performance only 1000 of 1000+ files are displayed.

......@@ -22,7 +22,7 @@ CFLAGS = @CFLAGS@
CPICFLAGS = @CPICFLAGS@
CPPFLAGS = @CPPFLAGS@
DEFS = @DEFS@ @R_DEFS@
DISTDIR_TAR_EXCLUDE = --exclude=.svn --exclude=Makefile --exclude="*.o" --exclude="*$(SHLIB_EXT)"
DISTDIR_TAR_EXCLUDE = --exclude=.svn --exclude=Makefile --exclude="*.o" --exclude="*$(SHLIB_EXT)" --exclude="*~"
DVIPS = @DVIPS@
DYLIB_EXT = @DYLIB_EXT@
DYLIB_LD = @DYLIB_LD@
......@@ -73,7 +73,6 @@ R_FRAMEWORK_DIR = $(prefix)/R.framework
R_GZIPCMD = @R_GZIPCMD@
## needed for AIX only
@USE_EXPORTFILES_TRUE@ R_HOME = $(top_builddir)
R_MODULES = @R_MODULES@
R_OSTYPE = @R_OSTYPE@
R_PKGS = $(R_PKGS_BASE) @USE_RECOMMENDED_PACKAGES_TRUE@ $(R_PKGS_RECOMMENDED)
R_PLATFORM = @R_PLATFORM@
......
......@@ -66,8 +66,9 @@ R: Makefile svnonly
docs: R FORCE
-@(cd doc && $(MAKE) $@)
-@(cd src/library && $(MAKE) $@)
help html latex examples: FORCE
-@(cd src/library && $(MAKE) $@)
## no longer relevant
#help html latex examples: FORCE
# -@(cd src/library && $(MAKE) $@)
FORCE:
stamp-recommended: R docs
......@@ -209,7 +210,7 @@ uninstall-tests:
-@(cd src/library && $(MAKE) $@)
-@(cd tests && $(MAKE) $@)
check check-devel check-all:
check check-devel check-all check-recommended:
@(cd tests && $(MAKE) $@)
reset-recommended:
......
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Revision: 49384
Last Changed Date: 2009-08-24
Revision: 50208
Last Changed Date: 2009-10-26
......@@ -19,6 +19,7 @@
## By means of this file you can (also) provide default values for the
## configuration process. To set variables, uncomment the VAR=DEFAULT
## lines and set DEFAULT according to your needs.
## See etc/Renviron.in for further variables you may wish to set.
## The command used to spool PostScript files to the printer.
## If unspecified, the system will look for either 'lpr' or 'lp'.
......@@ -226,3 +227,10 @@
## Set this if you want to use a make by another name.
## For example, if your GNU make is called 'gmake', use 'MAKE=gmake'.
## MAKE=
## Tar name
## Set this to prefer a tar which has the capability to automagically
## read compressed archives. The default is to choose 'gtar' (normally
## GNU tar) then 'tar', but other possibilities include 'bsdtar' from
## the libarchive project.
## TAR=
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......@@ -8,7 +8,8 @@ See the file COPYING for the exact conditions under which you may
redistribute it. R as a whole is distributed under GPL version 2:
most source files contain a copyright statement allow use of that file
under GPL version 2 or later: the main exceptions are packages 'rpart'
and 'survival' (GPL-2 only) and bundle 'VR' (GPL-2 or GPL-3).
and 'survival' (GPL-2 only) and packages 'MASS', 'class', 'nnet' and
'spatial' (GPL-2 or GPL-3).
The status of files used only in the Windows port is in file
src/gnuwin32/COPYRIGHTS.win, which is appended to this file in binary
......@@ -91,11 +92,6 @@ src/library/grDevices/inst/afm/cm*.afm
AMS copyright notice be removed from any derivative versions
of the fonts which have been altered in any way'.
doc/html/search/*.java
Copyright (C), 1998 Thomas Baier
or Copyright (C), 1998-2000, Thomas Baier, R Core Development Team
doc/manual/R-intro.texi
Copyright (C) 1990 W. N. Venables
......@@ -252,13 +248,6 @@ src/main/vsnprintf.c
*/
src/main/regex.c
Copyright (C) 2002, 2003, 2004, 2005 Free Software Foundation, Inc.
src/main/Rregex.h
Copyright (C) 1985,1989-93,1995-98,2000,2001,2002,2003
Free Software Foundation, Inc.
src/extra/xdr/*
Copyright (undated) Sun Microsystems, Inc.
......@@ -291,22 +280,6 @@ According to http://www.netlib.org/cephes/readme
guarantee.
src/main/apse.c
src/main/apse.h
Copyright (C) Jarkko Hietaniemi, 1998,1999,2000,2001.
This program is free software; you can redistribute it and/or modify
it under the terms of either:
a) the GNU Library General Public License as published by the Free
Software Foundation; either version 2, or (at your option) any
later version, or
b) the "Artistic License" which comes with Perl source code.
src/extra/pcre/LICENCE
src/extra/pcre/*.[ch]
......@@ -358,6 +331,40 @@ src/extra/bzip2/randtable.c
copyright (C) 1996-2008 Julian R Seward.
src/extra/tre/LICENSE
src/extra/tre/*.[ch]
Copyright (c) 2001-2009 Ville Laurikari <vl@iki.fi>
All rights reserved.
From tre-0.7.6 (http://laurikari.net/tre/). See file
src/extra/tre/LICENSE. For binary builds of R that requires us to
include
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS
``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
src/library/tools/src/md5.[ch]
Copyright (C) 1995, 1996, 2001 Free Software Foundation, Inc.
......@@ -400,13 +407,6 @@ share/perl/File/Copy/Recursive.pm
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.
share/perl/Text/Delimiter.pm
Copyright (C) Small Planet Software and Norman Walsh.
All rights reserved. This program is free software; you can
redistribute it and/or modify it under the same terms as Perl itself.
po/*.po
src/library/*/po/*.po
......
R FAQ
Frequently Asked Questions on R
Version 2.9.2009-08-23
Version 2.10.2009-10-23
ISBN 3-900051-08-9
Kurt Hornik
......@@ -255,7 +255,7 @@ sparc-sun-solaris.
2.3 What is the current version of R?
=====================================
The current released version is 2.9.2. Based on this
The current released version is 2.10.0. Based on this
`major.minor.patchlevel' numbering scheme, there are two development
versions of R, a patched version of the current release (`r-patched') and
one working towards the next minor or eventually major (`r-devel') releases
......@@ -812,7 +812,7 @@ the S language.
Contrary to other implementations of the S language, R has adopted an
evaluation model in which nested function definitions are lexically scoped.
This is analogous to the evalutation model in Scheme.
This is analogous to the evaluation model in Scheme.
This difference becomes manifest when _free_ variables occur in a
function. Free variables are those which are neither formal parameters
......@@ -1219,7 +1219,7 @@ for pointers to commercialized versions of R.
<jeff@math.montana.edu>. The Rweb Home Page
(http://www.math.montana.edu/Rweb/) provides access to all three versions
of Rweb--a simple text entry form that returns output and graphs, a more
sophisticated Javascript version that provides a multiple window
sophisticated JavaScript version that provides a multiple window
environment, and a set of point and click modules that are useful for
introductory statistics courses and require no knowledge of the R language.
All of the Rweb versions can analyze Web accessible datasets if a URL is
......@@ -1269,7 +1269,7 @@ The package is now maintained by Duncan Temple Lang
Rpad (http://www.rpad.org/Rpad), developed and actively maintained by
Tom Short, provides a sophisticated environment which combines some of the
features of the previous approaches with quite a bit of Javascript,
features of the previous approaches with quite a bit of JavaScript,
allowing for a GUI-like behavior (with sortable tables, clickable graphics,
editable output), etc.
......@@ -1374,7 +1374,8 @@ distributions of R.
*MASS*
Functions and datasets from the main package of Venables and Ripley,
"Modern Applied Statistics with S". (Contained in the `VR' bundle.)
"Modern Applied Statistics with S". (Contained in the `VR' bundle for
R versions prior to 2.10.0.)
*Matrix*
A Matrix package. (Recommended for R 2.9.0 or later.)
......@@ -1386,7 +1387,7 @@ distributions of R.
*class*
Functions for classification (k-nearest neighbor and LVQ). (Contained
in the `VR' bundle.)
in the `VR' bundle for R versions prior to 2.10.0.)
*cluster*
Functions for cluster analysis.
......@@ -1411,7 +1412,7 @@ distributions of R.
*nnet*
Software for single hidden layer perceptrons ("feed-forward neural
networks"), and for multinomial log-linear models. (Contained in the
`VR' bundle.)
`VR' bundle for R versions prior to 2.10.0.)
*rpart*
Recursive PARTitioning and regression trees.
......@@ -1419,7 +1420,7 @@ distributions of R.
*spatial*
Functions for kriging and point pattern analysis from "Modern Applied
Statistics with S" by W. Venables and B. Ripley. (Contained in the
`VR' bundle.)
`VR' bundle for R versions prior to 2.10.0.)
*survival*
Functions for survival analysis, including penalized likelihood.
......@@ -1434,9 +1435,9 @@ areas of interest.
additional software, or are shipping third party libraries for Windows
cannot be made available on CRAN in form of a Windows binary packages.
Nevertheless, some of these packages are available at the "CRAN extras"
repository at `http://www.stats.ox.ac.uk/pub/RWin/' kindly provided by
Brian D. Ripley. Note that this repository is a default repository for
recent versions of R for Windows.
repository at `http://www.stats.ox.ac.uk/pub/RWin/' kindly provided by Brian
D. Ripley. Note that this repository is a default repository for recent
versions of R for Windows.
5.1.3 Add-on packages from Omegahat
-----------------------------------
......@@ -1983,7 +1984,7 @@ compact form, e.g.,
where subexpressions enclosed in `.()' are replaced by their values.
There are more worked examples in the mailing list achives.
There are more worked examples in the mailing list archives.
7.14 What are valid names?
==========================
......@@ -2037,7 +2038,7 @@ smoothing splines, and is extendable. There is a `gam()' function for GAMs
in package *mgcv*, but it is not an exact clone of what is described in the
White Book (no `lo()' for example). Package *gss* can fit spline-based
GAMs too. And if you can accept regression splines you can use `glm()'.
For gaussian GAMs you can use `bruto()' from package *mda*.
For Gaussian GAMs you can use `bruto()' from package *mda*.
7.16 Why is the output not printed when I source() a file?
==========================================================
......@@ -2294,7 +2295,7 @@ relative to the x axis. See `?par' for more information.
By default, `read.table()' needs to read in everything as character data,