debian/changelog

-cdk (2.3-1) UNRELEASED; urgency=medium
+cdk (1:2.3-1) UNRELEASED; urgency=medium
 
   * Team upload.
   * New upstream version (Closes: #635182)

debian/libcdk-java.poms

@@ -76,7 +76,7 @@ storage/pom.xml --has-package-version
 storage/ctab/pom.xml --has-package-version
 storage/io/pom.xml --has-package-version
 storage/ioformats/pom.xml --has-package-version
-storage/iordf/pom.xml --has-package-version
+storage/iordf/pom.xml --has-package-version --ignore
 storage/libiocml/pom.xml --has-package-version
 storage/libiomd/pom.xml --has-package-version
 storage/pdb/pom.xml --has-package-version
@@ -99,6 +99,6 @@ tool/smsd/pom.xml --has-package-version
 tool/structgen/pom.xml --has-package-version
 tool/tautomer/pom.xml --has-package-version
 tool/model/pom.xml --has-package-version
-legacy/pom.xml --has-package-version
+legacy/pom.xml --has-package-version --ignore
 app/pom.xml --has-package-version
-app/depict/pom.xml --has-package-version
+app/depict/pom.xml --has-package-version --ignore

debian/maven.ignoreRules

@@ -6,4 +6,8 @@ org.codehaus.mojo findbugs-maven-plugin * * * *
 org.codehaus.mojo javacc-maven-plugin * * * *
 org.jacoco jacoco-maven-plugin * * * *
 org.mockito mockito-all * * * *
-org.openscience.cdk cdk-build-utils * * * *
+org.openscience.cdk cdk-test* * * * *
+org.openscience.cdk * test-jar
+org.openscience.cdk cdk-iordf jar
+org.openscience.cdk cdk-legacy jar
+org.openscience.cdk cdk-depict jar

debian/maven.properties

+# Include here properties to pass to Maven during the build.
+# For example:
+# maven.test.skip=true
+# project.build.sourceEncoding=UTF-8
+
+maven.test.skip=true

debian/patches/build.patch

+--- a/storage/ioformats/pom.xml
++++ b/storage/ioformats/pom.xml
+@@ -58,15 +58,9 @@
+             <scope>test</scope>
+         </dependency>
+         <dependency>
+-            <groupId>org.openscience.cdk</groupId>
+-            <artifactId>cdk-interfaces</artifactId>
+-            <version>${project.parent.version}</version>
+-        </dependency>
+-        <dependency>
+             <groupId>${project.groupId}</groupId>
+             <artifactId>cdk-interfaces</artifactId>
+             <version>${project.parent.version}</version>
+-            <scope>test</scope>
+         </dependency>
+         <dependency>
+             <groupId>${project.groupId}</groupId>

debian/patches/series

+build.patch

debian/rules

 #!/usr/bin/make -f
 
-include /usr/share/dpkg/pkg-info.mk
-
-COMPONENTS := \
-	annotation      atomtype        builder3d     \
-	builder3dtools  charges         control       \
-	core            data            dict          \
-	diff            extra           fingerprint   \
-	forcefield      formula         interfaces    \
-	ioformats       io              ionpot        \
-	isomorphism     libiocml        libiomd       \
-	nonotify        pcore           pdb           \
-	qm              qsar            qsaratomic    \
-	qsarbond        qsarionpot      qsarmolecular \
-	qsarprotein     reaction        render        \
-	sdg             smarts          smiles        \
-	standard        structgen      valencycheck
-
 %:
-	dh $@ --with javahelper
-
-override_dh_auto_build:
-	dh_auto_build -- -Dlib=/usr/share/java test # install
-
-override_dh_install:
-	dh_install
-	for COMPONENT in $(COMPONENTS); do \
-		install -m 644 dist/jar/cdk-$$COMPONENT.jar \
-			debian/libcdk-java/usr/share/java/cdk-$$COMPONENT-$(DEB_VERSION_UPSTREAM).jar; \
-		ln -s cdk-$$COMPONENT-$(DEB_VERSION_UPSTREAM).jar \
-			debian/libcdk-java/usr/share/java/cdk-$$COMPONENT.jar; \
-		if [ $$COMPONENT != "core" ]; then \
-			echo usr/share/java/cdk-$$COMPONENT.jar cdk-core.jar >> debian/classpath; \
-		else \
-			echo usr/share/java/cdk-$$COMPONENT.jar jama.jar jgrapht.jar log4j-1.2.jar xercesImpl.jar vecmath.jar xom.jar >> debian/classpath; \
-		fi \
-	done
+	dh $@
\ No newline at end of file