debian/changelog

+saxonhe (9.9.0.1+dfsg-1) unstable; urgency=medium
+
+  * New upstream release.
+  * Update Java source and target to 1.8
+  * Add patch to remove debugging
+  * Bump Standards-Version to 4.2.1.3
+  * Remove get-orig-source target from d/rules
+
+ -- Eugene Zhukov <eugene@debian.org>  Thu, 25 Oct 2018 21:52:08 +0300
+
 saxonhe (9.8.0.14+dfsg-1) unstable; urgency=medium
 
   * New upstream release.

debian/control

@@ -15,8 +15,8 @@ Build-Depends: debhelper (>= 11),
  libcommons-io-java,
  libintellij-annotations-java,
  libicu4j-java
-Standards-Version: 4.1.4
-Vcs-Git: https://salsa.debian.org/java-team/saxonhe
+Standards-Version: 4.2.1.3
+Vcs-Git: https://salsa.debian.org/java-team/saxonhe.git
 Vcs-Browser: https://salsa.debian.org/java-team/saxonhe
 Homepage: http://www.saxonica.com/
 

debian/copyright

 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Saxon-HE
 Source: http://www.saxonica.com/
+Comment: Tarball is repacked to remove folder with inappropriate license
 
 Files: *
 Copyright: 1999-2014, Saxonica
@@ -20,7 +21,9 @@ Files: debian/*
 Copyright: 2013, Eugene Zhukov <eugene@debian.org>
 License: MPL-2.0
 
-Files: data/analyze-string.xsd data/json.xsd data/xpath-functions.xsd
+Files: net/sf/saxon/data/analyze-string.xsd
+       net/sf/saxon/data/json.xsd
+       net/sf/saxon/data/xpath-functions.xsd
 Copyright: 1994-2002 World Wide Web Consortium
 License: W3C-SOFTWARE-NOTICE-AND-LICENSE
 

debian/patches/pom_added.patch

-Description: Adds pom.xml for building
-   * The pom.xml created for packaging purposes
-Author: Eugene Zhukov <jevgeni.zh@gmail.com>
-Last-Update: 2014-09-14
+Description: Add pom.xml for building and packaging
 
 --- /dev/null
 +++ b/pom.xml
@@ -11,7 +8,7 @@ Last-Update: 2014-09-14
 +  <modelVersion>4.0.0</modelVersion>
 +  <groupId>net.sf.saxon</groupId>
 +  <artifactId>Saxon-HE</artifactId>
-+  <version>9.8.0.14</version>
++  <version>9.9.0.1</version>
 +  <packaging>jar</packaging>
 +  <name>Saxon-HE</name>
 +  <description>The XSLT and XQuery Processor</description>
@@ -74,8 +71,8 @@ Last-Update: 2014-09-14
 +          <artifactId>maven-compiler-plugin</artifactId>
 +          <configuration>
 +            <encoding>ISO-8859-1</encoding>
-+            <source>1.6</source>
-+            <target>1.6</target>
++            <source>1.8</source>
++            <target>1.8</target>
 +          </configuration>
 +        </plugin>
 +      </plugins>

debian/patches/remove_debug.patch

+Description: Remove SaxonCAPI.debug statements
+
+--- saxonhe-9.9.0.1+dfsg.orig/net/sf/saxon/jetonnet/JetPullProvider.java
++++ saxonhe-9.9.0.1+dfsg/net/sf/saxon/jetonnet/JetPullProvider.java
+@@ -6,7 +6,6 @@ import net.sf.saxon.expr.parser.Explicit
+ import net.sf.saxon.expr.parser.Location;
+ import net.sf.saxon.lib.ParseOptions;
+ import net.sf.saxon.om.*;
+-import net.sf.saxon.option.cpp.SaxonCAPI;
+ import net.sf.saxon.pull.PullProvider;
+ import net.sf.saxon.pull.PullSource;
+ import net.sf.saxon.pull.UnparsedEntity;
+@@ -40,9 +39,6 @@ public class JetPullProvider implements
+ 
+ 
+     public JetPullProvider(Object parser, long parserPtr, String bURI) {
+-        if (SaxonCAPI.debug) {
+-            System.err.println("Java: Parser pointer long value="+parserPtr);
+-        }
+         this.parser = parser;
+         this.parserPtr = parserPtr;
+         this.parserPtrInt = (int)parserPtr;
+@@ -111,9 +107,6 @@ public class JetPullProvider implements
+     @Override
+     public int next() throws XPathException {
+ 
+-        if (SaxonCAPI.debug) {
+-            System.err.println("Java: next(), current = " + current + " empty: " + isEmptyElement);
+-        }
+         if (current == START_OF_INPUT) {
+             current = START_DOCUMENT;
+             return current;
+@@ -145,9 +138,6 @@ public class JetPullProvider implements
+ 
+             int intype = get_NodeType(parserPtr);
+             isEmptyElement = get_IsEmptyElement(parserPtr);
+-            if (SaxonCAPI.debug) {
+-                System.err.println("Java: Next event: " + intype + " at depth " + get_Depth(parserPtr) + " empty: " + isEmptyElement + "," + get_IsEmptyElement(parserPtr));
+-            }
+             if (get_EOF(parserPtr)) {
+                 current = END_DOCUMENT;
+                 return current;
+@@ -251,9 +241,6 @@ public class JetPullProvider implements
+                 String namespaceURI = result.substring(result.indexOf("{") + 1, closingBracket);
+                 String localName = result.substring(closingBracket + 1, valueIndex);
+                 String value = result.substring(valueIndex + 1);
+-                if (SaxonCAPI.debug) {
+-                    System.err.println("Java: getNodeName prefix= " + prefix + ", namespace=" + namespaceURI + ", localName=" + localName + " value=" + value);
+-                }
+                 NodeName nc = new FingerprintedQName(prefix, namespaceURI, localName);
+                 // .NET does not report the attribute type (even if it's an ID...)
+                 atts.addAttribute(nc, BuiltInAtomicType.UNTYPED_ATOMIC, value, ExplicitLocation.UNKNOWN_LOCATION, 0);
+@@ -289,9 +276,6 @@ public class JetPullProvider implements
+         String prefix = result.substring(0, openingBracket);
+         String namespaceURI = result.substring(result.indexOf("{") + 1, closingBracket);
+         String localName = result.substring(closingBracket + 1);
+-        if (SaxonCAPI.debug) {
+-            System.err.println("Java: getNodeName prefix= " + prefix + ", namespace=" + namespaceURI + ", localName=" + localName);
+-        }
+         return new FingerprintedQName(prefix, namespaceURI, localName);
+     }
+ 
+--- saxonhe-9.9.0.1+dfsg.orig/net/sf/saxon/jetonnet/JetStream.java
++++ saxonhe-9.9.0.1+dfsg/net/sf/saxon/jetonnet/JetStream.java
+@@ -3,7 +3,6 @@ package net.sf.saxon.jetonnet;
+ import net.sf.saxon.Configuration;
+ import net.sf.saxon.lib.ParseOptions;
+ import net.sf.saxon.om.NodeInfo;
+-import net.sf.saxon.option.cpp.SaxonCAPI;
+ import net.sf.saxon.pull.PullSource;
+ import net.sf.saxon.s9api.Processor;
+ import net.sf.saxon.s9api.XdmNode;

debian/patches/series

 pom_added.patch
+remove_debug.patch

debian/rules

@@ -2,6 +2,3 @@
 
 %:
 	dh $@ --buildsystem=maven
-
-get-orig-source:
-	uscan --verbose --download-current-version --force-download --rename --no-symlink

net/sf/saxon/BasicTransformerFactory.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -19,16 +19,13 @@ import net.sf.saxon.jaxp.SaxonTransformerFactory;
  * file. This is therefore the recommended factory to use if you want to be sure
  * that an application will run successfully under Saxon-HE, and will fail if it attempts to
  * use Saxon-PE or Saxon-EE facilities.</p>
- * <p/>
  * <p>The system property that determines which Factory implementation
  * to create is named "javax.xml.transform.TransformerFactory". This
  * property names a concrete subclass of the TransformerFactory abstract
  * class. If the property is not defined, a platform default is be used.</p>
- * <p/>
  * <p>This implementation class implements the abstract methods on both the
  * javax.xml.transform.TransformerFactory and javax.xml.transform.sax.SAXTransformerFactory
  * classes.</p>
- * <p/>
  * <p>This class is the "public" implementation of the TransformerFactory
  * interface for Saxon-HE. It is a trivial subclass of the internal class
  * {@link SaxonTransformerFactory}, which is in a separate package

net/sf/saxon/Platform.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -196,7 +196,7 @@ public interface Platform {
      *
      * @param edition The edition of the software that is loaded ("HE", "PE", or "EE")
      * @param config  the Saxon configuration
-     * @return the name of the directory in which Saxon is installaed, if available, or null otherwise
+     * @return the name of the directory in which Saxon is installed, if available, or null otherwise
      */
 
     String getInstallationDirectory(String edition, Configuration config);
@@ -205,6 +205,7 @@ public interface Platform {
      * Register all the external object models that are provided as standard
      * with the relevant edition of Saxon for this Configuration
      *
+     * @param config  the Saxon configuration
      * @since 9.3
      */
 
@@ -215,6 +216,7 @@ public interface Platform {
      * Needed because the Apache catalog resolver uses the SAXParserFactory to instantiate
      * a parser, and if not customized this causes a failure on the .NET platform.
      *
+     * @param config  the Saxon configuration
      * @since 9.4
      */
 
@@ -236,6 +238,7 @@ public interface Platform {
 
     /**
      * Make an instance of the default module URI resolver for this platform
+     * @param config  the Saxon configuration
      * @return an instance of ModuleURIResolver
      * @since 9.7.0.2
      */
@@ -253,7 +256,7 @@ public interface Platform {
      * @since 9.6.0.3
      */
 
-    ClassLoader makeClassLoader(Configuration config, Class thisClass);
+    ClassLoader makeGeneratedClassLoader(Configuration config, Class thisClass);
 //#endif
 
 }

net/sf/saxon/PreparedStylesheet.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -16,12 +16,14 @@ import net.sf.saxon.functions.FunctionLibraryList;
 import net.sf.saxon.lib.NamespaceConstant;
 import net.sf.saxon.lib.OutputURIResolver;
 import net.sf.saxon.om.StructuredQName;
+import net.sf.saxon.serialize.SerializationProperties;
 import net.sf.saxon.style.Compilation;
 import net.sf.saxon.style.StylesheetPackage;
 import net.sf.saxon.trace.ExpressionPresenter;
 import net.sf.saxon.trans.CompilerInfo;
 import net.sf.saxon.trans.SymbolicName;
 import net.sf.saxon.trans.XPathException;
+import net.sf.saxon.trans.XsltController;
 import net.sf.saxon.trans.rules.RuleManager;
 
 import java.net.URI;
@@ -109,20 +111,12 @@ public class PreparedStylesheet extends Executable {
      * @see net.sf.saxon.Controller
      */
 
-    public Controller newController() {
+    public XsltController newController() {
         Configuration config = getConfiguration();
-        Controller c = new Controller(config, this);
+        XsltController c = new XsltController(config, this);
         c.setMessageReceiverClassName(messageReceiverClassName);
         c.setOutputURIResolver(outputURIResolver);
         c.setRecoveryPolicy(recoveryPolicy);
-        if (defaultInitialTemplate != null) {
-            try {
-                c.setInitialTemplate(defaultInitialTemplate);
-            } catch (XPathException err) {
-                // ignore error if there is no template with this name
-            }
-
-        }
         if (defaultInitialMode != null) {
             try {
                 c.setInitialMode(defaultInitialMode);
@@ -194,11 +188,19 @@ public class PreparedStylesheet extends Executable {
 
     public void putNamedTemplate(StructuredQName templateName, NamedTemplate template) {
         if (namedTemplateTable == null) {
-            namedTemplateTable = new HashMap<StructuredQName, NamedTemplate>(32);
+            namedTemplateTable = new HashMap<>(32);
         }
         namedTemplateTable.put(templateName, template);
     }
 
+    /**
+     * Get the default initial template name
+     */
+
+    public StructuredQName getDefaultInitialTemplateName() {
+        return defaultInitialTemplate;
+    }
+
     /**
      * Register the index of components
      *
@@ -252,18 +254,13 @@ public class PreparedStylesheet extends Executable {
     }
 
     /**
-     * Get the properties for xsl:output.  JAXP method. The object returned will
+     * Get the properties for xsl:output, including character maps.  The object returned will
      * be a clone of the internal values, and thus it can be mutated
-     * without mutating the Templates object, and then handed in to
-     * the process method.
-     * <p>In Saxon, the properties object is a new, empty, Properties object that is
-     * backed by the live properties to supply default values for missing properties.
-     * This means that the property values must be read using the getProperty() method.
-     * Calling the get() method on the underlying Hashtable will return null.</p>
-     * <p>In Saxon 8.x, this method gets the output properties for the unnamed output
+     * without affecting the value held in this {@code PreparedStylesheet}.
+     * <p>This method gets the output properties for the unnamed output
      * format in the stylesheet.</p>
      *
-     * @return A Properties object reflecting the output properties defined
+     * @return An OutputProperties object reflecting the output properties defined
      * for the default (unnamed) output format in the stylesheet. It may
      * be mutated and supplied to the setOutputProperties() method of the
      * Transformer, without affecting other transformations that use the
@@ -271,10 +268,9 @@ public class PreparedStylesheet extends Executable {
      * @see javax.xml.transform.Transformer#setOutputProperties
      */
 
-
-    public Properties getOutputProperties() {
-        Properties details = getDefaultOutputProperties();
-        return new Properties(details);
+    public SerializationProperties getDeclaredSerializationProperties() {
+        SerializationProperties details = getPrimarySerializationProperties();
+        return new SerializationProperties(new Properties(details.getProperties()), getCharacterMapIndex());
     }
 
     /**
@@ -318,7 +314,7 @@ public class PreparedStylesheet extends Executable {
         }
         if (abs != null) {
             if (nextStylesheetCache == null) {
-                nextStylesheetCache = new HashMap<URI, PreparedStylesheet>(4);
+                nextStylesheetCache = new HashMap<>(4);
             }
             nextStylesheetCache.put(abs, pss);
         }
@@ -341,7 +337,7 @@ public class PreparedStylesheet extends Executable {
         explainNamedTemplates(presenter);
         presenter.startElement("accumulators");
         for (Accumulator acc : getTopLevelPackage().getAccumulatorRegistry().getAllAccumulators()) {
-            ((Actor)acc).export(presenter);
+            acc.export(presenter);
         }
         presenter.endElement();
         FunctionLibraryList libList = getFunctionLibrary();

net/sf/saxon/Transform.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -13,6 +13,7 @@ import net.sf.saxon.lib.*;
 import net.sf.saxon.s9api.*;
 import net.sf.saxon.style.StylesheetPackage;
 import net.sf.saxon.trace.AbstractTraceListener;
+import net.sf.saxon.trace.Instrumentation;
 import net.sf.saxon.trace.TimingCodeInjector;
 import net.sf.saxon.trace.TimingTraceListener;
 import net.sf.saxon.trans.CommandLineOptions;
@@ -39,15 +40,15 @@ import java.util.*;
 
 /**
  * This <b>Transform</b> class is the command-line entry point to the Saxon XSLT Processor.
- * <p/>
  * <p>It is possible to subclass this class to provide a customized command line interface. In writing such
  * a subclass:</p>
- * <p/>
  * <ul>
  * <li>The {@link #main} method should instantiate the class and call the {@link #doTransform} method, passing the
  * argument list. The argument list can be augmented or modified if required: for example, by adding a -config
  * argument to cause the configuration to be initialized from a configuration file.</li>
- * <li>The {@link #setFactoryConfiguration} method can be implemented
+ * <li>The {@link #initializeConfiguration} method can be implemented to customize the configuration in which
+ * the transformation will run.</li>
+ * </ul>
  */
 
 public class Transform {
@@ -64,8 +65,8 @@ public class Transform {
 
     /**
      * Main program, can be used directly from the command line.
-     * <p>The format is:</P>
-     * <p>java net.sf.saxon.Transform [options] <I>source-file</I> <I>style-file</I> &gt;<I>output-file</I></P>
+     * <p>The format is:</p>
+     * <p>java net.sf.saxon.Transform [options] <I>source-file</I> <I>style-file</I> &gt;<I>output-file</I></p>
      * <p>followed by any number of parameters in the form {keyword=value}... which can be
      * referenced from within the stylesheet.</p>
      * <p>This program applies the XSL style sheet in style-file to the source XML document in source-file.</p>
@@ -135,7 +136,7 @@ public class Transform {
         options.addRecognizedOption("o", CommandLineOptions.TYPE_FILENAME | CommandLineOptions.VALUE_REQUIRED,
                                     "Use specified file for primary output");
         options.addRecognizedOption("opt", CommandLineOptions.TYPE_STRING | CommandLineOptions.VALUE_REQUIRED,
-                                    "Enable/disable optimization options [-]cfgklmsvwx");
+                                    "Enable/disable optimization options [-]cfgjklmrsvwx");
         options.addRecognizedOption("or", CommandLineOptions.TYPE_CLASSNAME | CommandLineOptions.VALUE_REQUIRED,
                                     "Use named OutputURIResolver class");
         options.addRecognizedOption("outval", CommandLineOptions.TYPE_ENUMERATION | CommandLineOptions.VALUE_REQUIRED,
@@ -355,7 +356,7 @@ public class Transform {
             String value = options.getOptionValue("explain");
             if (value != null) {
                 explain = true;
-                processor.setConfigurationProperty(FeatureKeys.TRACE_OPTIMIZER_DECISIONS, true);
+                processor.setConfigurationProperty(Feature.TRACE_OPTIMIZER_DECISIONS, true);
                 jit = false;
                 compiler.setJustInTimeCompilation(jit);
                 if (!"".equals(value)) {
@@ -384,8 +385,12 @@ public class Transform {
             value = options.getOptionValue("jit");
             if (value != null) {
                 if ("on".equals(value) && exportOutputFileName == null && run) {
-                    //TODO the combination of the options jit, nogo and export should give an warning
-                    jit = true;
+                    if (export) {
+                        jit = false;
+                        System.err.println("Warning: -jit:on is ignored when -export:on is set");
+                    } else {
+                        jit = true;
+                    }
                 } else if ("off".equals(value)) {
                     jit = false;
                 }
@@ -396,7 +401,7 @@ public class Transform {
             value = options.getOptionValue("lib");
             if (value != null) {
                 StringTokenizer st = new StringTokenizer(value, File.pathSeparator);
-                Set<File> packs = new HashSet<File>();
+                Set<File> packs = new HashSet<>();
                 while (st.hasMoreTokens()) {
                     String n = st.nextToken();
                     packs.add(new File(n));
@@ -417,6 +422,10 @@ public class Transform {
 
             value = options.getOptionValue("nogo");
             if (value != null) {
+                if (jit) {
+                    jit = false;
+                    System.err.println("Warning: -jit:on is ignored when -nogo is set");
+                }
                 run = false;
                 compiler.setJustInTimeCompilation(false);
             }
@@ -450,7 +459,7 @@ public class Transform {
             if (value != null) {
                 System.err.println(config.getProductTitle());
                 System.err.println(Version.platform.getPlatformVersion());
-                processor.setConfigurationProperty(FeatureKeys.TIMING, true);
+                processor.setConfigurationProperty(Feature.TIMING, true);
                 showTime = true;
             }
 
@@ -461,8 +470,8 @@ public class Transform {
                 } else {
                     traceListener = config.makeTraceListener(value);
                 }
-                processor.setConfigurationProperty(FeatureKeys.TRACE_LISTENER, traceListener);
-                processor.setConfigurationProperty(FeatureKeys.LINE_NUMBERING, true);
+                processor.setConfigurationProperty(Feature.TRACE_LISTENER, traceListener);
+                processor.setConfigurationProperty(Feature.LINE_NUMBERING, true);
 
                 value = options.getOptionValue("Tlevel");
                 if (value != null && traceListener instanceof AbstractTraceListener) {
@@ -481,14 +490,14 @@ public class Transform {
             value = options.getOptionValue("TB");
             if (value != null) {
                 // Trace hotspot byte code generation and produce a report.
-                config.setBooleanProperty(FeatureKeys.MONITOR_HOT_SPOT_BYTE_CODE, true);
+                config.setBooleanProperty(Feature.MONITOR_HOT_SPOT_BYTE_CODE, true);
             }
 
             value = options.getOptionValue("TP");
             if (value != null) {
                 traceListener = new TimingTraceListener();
-                processor.setConfigurationProperty(FeatureKeys.TRACE_LISTENER, traceListener);
-                processor.setConfigurationProperty(FeatureKeys.LINE_NUMBERING, true);
+                processor.setConfigurationProperty(Feature.TRACE_LISTENER, traceListener);
+                processor.setConfigurationProperty(Feature.LINE_NUMBERING, true);
                 compiler.getUnderlyingCompilerInfo().setCodeInjector(new TimingCodeInjector());
                 if (value.length() > 0) {
                     traceListener.setOutputDestination(
@@ -522,7 +531,7 @@ public class Transform {
             value = options.getOptionValue("x");
             if (value != null) {
                 sourceParserName = value;
-                processor.setConfigurationProperty(FeatureKeys.SOURCE_PARSER_CLASS, sourceParserName);
+                processor.setConfigurationProperty(Feature.SOURCE_PARSER_CLASS, sourceParserName);
             }
 
             value = options.getOptionValue("xsd");
@@ -532,7 +541,7 @@ public class Transform {
 
             value = options.getOptionValue("xsdversion");
             if (value != null) {
-                processor.setConfigurationProperty(FeatureKeys.XSD_VERSION, value);
+                processor.setConfigurationProperty(Feature.XSD_VERSION, value);
             }
 
             value = options.getOptionValue("xsl");
@@ -543,7 +552,7 @@ public class Transform {
             value = options.getOptionValue("y");
             if (value != null) {
                 styleParserName = value;
-                processor.setConfigurationProperty(FeatureKeys.STYLE_PARSER_CLASS, value);
+                processor.setConfigurationProperty(Feature.STYLE_PARSER_CLASS, value);
             }
 
             value = options.getOptionValue("?");
@@ -701,7 +710,11 @@ public class Transform {
 
 
                 if (sheet == null) {
-                    for (int j = 0; j < repeat; j++) {
+                    int repeatComp = repeat;
+                    if (repeatComp > 20) {
+                        repeatComp = 20;
+                    }
+                    for (int j = 0; j < repeatComp; j++) {
                         // Repeat loop is to get reliable performance data
 
                         options.applyStaticParams(compiler);
@@ -735,7 +748,7 @@ public class Transform {
                     out.setOutputProperty(Serializer.Property.METHOD, "xml");
                     out.setOutputProperty(Serializer.Property.INDENT, "yes");
                     out.setOutputProperty(Serializer.Property.OMIT_XML_DECLARATION, "yes");
-                    if (!"HE".equals(processor.getSaxonEdition())) {
+                    if (config.isLicensedFeature(Configuration.LicenseFeature.PROFESSIONAL_EDITION)) {
                         out.setOutputProperty(Serializer.Property.SAXON_INDENT_SPACES, "2");
                     }
                     sheet.explain(out);
@@ -743,47 +756,51 @@ public class Transform {
                 if (export) {
                     sheet.export(new FileOutputStream(exportOutputFileName));
                     if (showTime) {
-                        System.err.println("Stylesheet exported to: " + exportOutputFileName);
+                        System.err.println("Stylesheet exported to: " + new File(exportOutputFileName).getAbsolutePath());
                     }
                 }
 
                 if (run) {
 
-                    if (wholeDirectory) {
-                        if ((threadCount > 0) && (sources.size() > 1)) {
-                            if (threadCount > sources.size()) {
-                                threadCount = sources.size();
-                            }
-
-                            //calculate sources per thread
-                            int sourcesPerThread = (int) Math.floor(sources.size() / threadCount);
-
-                            //split remainder of sources amongst rem threads
-                            int rem = sources.size() % threadCount;
-                            th = new TransformThread[threadCount];
-                            // long elapsedTime = System.nanoTime();
-                            for (int i = 0, j = 0, z = 0; i < sources.size(); j++, i += sourcesPerThread + z) {
-                                z = j < rem ? 1 : 0;  //split remainder of sources amongst rem threads
-                                th[j] = new TransformThread(i, sheet, sources.subList(i, i + sourcesPerThread + z), outputFile, options, traceDestination);
-                                th[j].start();
-                            }
-                            for (TransformThread aTh : th) {
-                                aTh.join();
+                    try {
+                        if (wholeDirectory) {
+                            if ((threadCount > 0) && (sources.size() > 1)) {
+                                if (threadCount > sources.size()) {
+                                    threadCount = sources.size();
+                                }
+
+                                //calculate sources per thread
+                                int sourcesPerThread = (int) Math.floor(sources.size() / threadCount);
+
+                                //split remainder of sources amongst rem threads
+                                int rem = sources.size() % threadCount;
+                                th = new TransformThread[threadCount];
+                                // long elapsedTime = System.nanoTime();
+                                for (int i = 0, j = 0, z = 0; i < sources.size(); j++, i += sourcesPerThread + z) {
+                                    z = j < rem ? 1 : 0;  //split remainder of sources amongst rem threads
+                                    th[j] = new TransformThread(i, sheet, sources.subList(i, i + sourcesPerThread + z), outputFile, options, traceDestination);
+                                    th[j].start();
+                                }
+                                for (TransformThread aTh : th) {
+                                    aTh.join();
+                                }
+                                // elapsedTime = System.nanoTime() - elapsedTime;
+                                // System.out.println("Total Elapsed Time: "+elapsedTime/1e6 + "ms");
+
+
+                            } else {
+                                processDirectory(sources, sheet, outputFile, options, traceDestination);
                             }
-                            // elapsedTime = System.nanoTime() - elapsedTime;
-                            // System.out.println("Total Elapsed Time: "+elapsedTime/1e6 + "ms");
-
-
                         } else {
-                            processDirectory(sources, sheet, outputFile, options, traceDestination);
+                            Source source = sources == null || sources.isEmpty() ? null : sources.get(0);
+                            processFile(source, sheet, outputFile, options, traceDestination);
+                        }
+                    } finally {
+                        if (closeTraceDestination && traceDestination != null) {
+                            traceDestination.close();
                         }
-                    } else {
-                        Source source = sources == null || sources.isEmpty() ? null : sources.get(0);
-                        processFile(source, sheet, outputFile, options, traceDestination);
-                    }
-                    if (closeTraceDestination) {
-                        traceDestination.close();
                     }
+
                 }
                 if (options.getOptionValue("TB")!=null) {
                     // report on hotspot bytecode generation
@@ -951,7 +968,7 @@ public class Transform {
      */
 
     private File makeOutputFile(File directory, String localName, XsltExecutable sheet) {
-        String mediaType = sheet.getUnderlyingCompiledStylesheet().getDefaultOutputProperties().getProperty(OutputKeys.MEDIA_TYPE);
+        String mediaType = sheet.getUnderlyingCompiledStylesheet().getPrimarySerializationProperties().getProperty(OutputKeys.MEDIA_TYPE);
         String suffix = ".xml";
         if ("text/html".equals(mediaType)) {
             suffix = ".html";
@@ -1008,7 +1025,7 @@ public class Transform {
                         transformer.newSerializer(System.out) :
                         transformer.newSerializer(outFile);
         try {
-            options.setSerializationParams(serializer);
+            options.setSerializationProperties(serializer);
         } catch (IllegalArgumentException e) {
             quit(e.getMessage(), 2);
         }
@@ -1053,7 +1070,7 @@ public class Transform {
         String now = options.getOptionValue("now");
         if (now != null) {
             try {
-                DateTimeValue currentDateTime = (DateTimeValue) DateTimeValue.makeDateTimeValue(
+                DateTimeValue currentDateTime = (DateTimeValue)DateTimeValue.makeDateTimeValue(
                         now, getConfiguration().getConversionRules()).asAtomic();
                 transformer.getUnderlyingController().setCurrentDateTime(currentDateTime);
             } catch (XPathException e) {
@@ -1177,25 +1194,27 @@ public class Transform {
                 traceDestination = null;
             }
             Xslt30Transformer transformer = newTransformer(sheet, options, traceDestination);
-            Serializer serializer =
-                    outputFile == null ?
-                            transformer.newSerializer(System.out) :
-                            transformer.newSerializer(outputFile);
+            Serializer serializer;
+            if (outputFile == null) {
+                transformer.setBaseOutputURI(new File(System.getProperty("user.dir")).toURI().toASCIIString());
+                serializer = transformer.newSerializer(System.out);
+            }else {
+                serializer = transformer.newSerializer(outputFile);
+            }
             try {
-                options.setSerializationParams(serializer);
+                options.setSerializationProperties(serializer);
             } catch (IllegalArgumentException e) {
                 quit(e.getMessage(), 2);
             }
 
             boolean buildResultTree;
-            Properties props = serializer.getCombinedOutputProperties();
-            String buildTreeProperty = props.getProperty(SaxonOutputKeys.BUILD_TREE);
+            String buildTreeProperty = serializer.getOutputProperty(Serializer.Property.BUILD_TREE);
             if ("yes".equals(buildTreeProperty)) {
                 buildResultTree = true;
             } else if ("no".equals(buildTreeProperty)) {
                 buildResultTree = false;
             } else {
-                String method = props.getProperty(OutputKeys.METHOD);
+                String method = serializer.getOutputProperty(Serializer.Property.METHOD);
                 buildResultTree = !("json".equals(method) || "adaptive".equals(method));
             }
 
@@ -1224,9 +1243,9 @@ public class Transform {
                             builder.setSchemaValidator(validator);
                         }
                     }
-                    builder.setDTDValidation(getConfiguration().getBooleanProperty(FeatureKeys.DTD_VALIDATION));
+                    builder.setDTDValidation(getConfiguration().getBooleanProperty(Feature.DTD_VALIDATION));
                     builder.setWhitespaceStrippingPolicy(sheet.getWhitespaceStrippingPolicy());
-                    if (getConfiguration().getBooleanProperty(FeatureKeys.DTD_VALIDATION_RECOVERABLE)) {
+                    if (getConfiguration().getBooleanProperty(Feature.DTD_VALIDATION_RECOVERABLE)) {
                         source = new AugmentedSource(source, getConfiguration().getParseOptions());
                     }
                     XdmNode node = builder.build(source);
@@ -1272,6 +1291,10 @@ public class Transform {
                     System.err.println("-------------------------------");
                     Runtime.getRuntime().gc();
                 }
+                if (Instrumentation.ACTIVE) {
+                    Instrumentation.report();
+                    Instrumentation.reset();
+                }
             }
             if (repeat == 999999 && totalTime > 60000) {
                 break;

net/sf/saxon/TransformerFactoryImpl.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -13,7 +13,6 @@ import net.sf.saxon.jaxp.SaxonTransformerFactory;
 /**
  * A TransformerFactory instance can be used to create Transformer and Template
  * objects.
- * <p/>
  * <p>This implementation of the JAXP TransformerFactory interface provides Saxon-HE,
  * Saxon-PE, or Saxon-EE capability, depending on what software has been loaded from
  * the classpath, and what license key is available.</p>
@@ -25,17 +24,14 @@ import net.sf.saxon.jaxp.SaxonTransformerFactory;
  * to create is named "javax.xml.transform.TransformerFactory". This
  * property names a concrete subclass of the TransformerFactory abstract
  * class. If the property is not defined, a platform default is be used.</p>
- * <p/>
  * <p>This implementation class implements the abstract methods on both the
  * javax.xml.transform.TransformerFactory and javax.xml.transform.sax.SAXTransformerFactory
  * classes.</p>
- * <p/>
  * <p>Since Saxon 9.6, the JAXP transformation interface is re-implemented as a layer
  * on top of the s9api interface. This will affect applications that attempt to
  * down-cast from JAXP interfaces to the underlying implementation classes.</p>
- * <p/>
- * <p>This class is the "public" implementation of the TransformerFactory
- * interface for Saxon-HE. It is a trivial subclass of the internal class
+ * <p>This class is Saxon's "public" implementation of the TransformerFactory
+ * interface. It is a trivial subclass of the internal class
  * {@link net.sf.saxon.jaxp.SaxonTransformerFactory}, which is in a separate package
  * along with the implementation classes to which it has protected access.</p>
  */

net/sf/saxon/Version.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -13,11 +13,11 @@ package net.sf.saxon;
 
 public final class Version {
 
-    private static final int[] STRUCTURED_VERSION = {9, 8, 0, 14};
-    private static final String VERSION = "9.8.0.14";
-    private static final String BUILD = "072511"; //mmddhh
-    private static final String RELEASE_DATE = "2018-07-25"; //yyy-mm-dd
-    private static final String MAJOR_RELEASE_DATE = "2017-06-08";
+    private static final int[] STRUCTURED_VERSION = {9, 9, 0, 1};
+    private static final String VERSION = "9.9.0.1";
+    private static final String BUILD = "092715"; //mmddhh
+    private static final String RELEASE_DATE = "2018-09-27";
+    private static final String MAJOR_RELEASE_DATE = "2018-09-27";
 
     private Version() {
         // class is never instantiated
@@ -169,7 +169,7 @@ public final class Version {
             platform = new com.saxonica.config.JavaPlatformPE();
         //#endif
         //#if EE==true  && SAXONC != true
-            platform = new com.saxonica.config.JavaPlatformEE();
+           platform = new com.saxonica.config.JavaPlatformEE();
         //#endif
 //#endif
     }

net/sf/saxon/data/profile.xsl

+<?xml version='1.0' encoding='UTF-8'?>
+<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
+    xmlns:xs="http://www.w3.org/2001/XMLSchema"
+    xmlns:f="http://saxonica.com/ns/profile-functions"
+    exclude-result-prefixes="xs"
+    expand-text="yes"
+    version="3.0">
+    
+    <xsl:param name="lang" as="xs:string" static="yes" required="yes"/>
+    
+    <xsl:variable name="process" as="xs:string" static="yes" select="if ($lang = 'XSLT') then 'Stylesheet' else 'Query'"/>
+    <xsl:variable name="templateOr" select="if ($lang = 'XSLT') then 'template, ' else ''"/>
+    <xsl:variable name="templatesAnd" select="if ($lang = 'XSLT') then 'templates and ' else ''"/>
+    
+    <xsl:variable name="style" as="xs:string" expand-text="no">
+        
+        
+        body {
+        background: #e4eef0;
+        }
+        
+        h1 {
+        font-family: Verdana, Arial, Helvetica, sans-serif;
+        font-size: 14pt;
+        font-style: normal;
+        color: #3D5B96;
+        font-weight: bold;
+        }
+        
+        h2 {
+        font-family: Verdana, Arial, Helvetica, sans-serif;
+        font-size: 12pt;
+        font-style: normal;
+        color: #96433D;
+        font-weight: bold;
+        }		
+        
+        p {
+        font-family: Verdana, Arial, Helvetica, sans-serif;
+        font-size: 9pt;
+        font-style: normal;
+        color: #3D5B96;
+        font-weight: normal;
+        line-height: 1.3em;
+        padding-right:15px;
+        }
+        
+        table {
+        border-collapse: collapse;
+        border: 1px solid black;
+        }
+        
+        th, td {
+        border: 1px solid black;
+        font-family: Verdana, Arial, Helvetica, sans-serif;
+        font-size: 9pt;
+        font-style: normal;
+        color: #3D5B96;
+        text-decoration: none;
+        line-height: 1.3em;
+        padding-left: 15px;
+        text-indent: -15px;
+        padding-right: 15px;
+        padding-top: 0px;
+        padding-bottom: 0px;
+        }
+        
+        th {
+        background: #B1CCC7;
+        font-weight: bold;
+        }
+        
+        td {
+        font-weight: normal;
+        }
+        
+    </xsl:variable>
+    
+    <xsl:template match="*">
+        <html>
+            <head>
+                <title>Analysis of {$process} + Execution Time</title>
+                <style>{$style}</style>
+            </head>
+            <body>
+                <h1>Analysis of {$process} Execution Time</h1>
+                <p>Total time: {format-number(@t-total, "#0.000")} milliseconds</p>
+                <h2>Time spent in each {$templateOr} function or global variable:</h2>
+                <p>The table below is ordered by the total net time spent in the {$templateOr} 
+                    function or global variable. Gross time means the time including called
+                    {$templatesAnd} functions (recursive calls only count from the original entry);
+                    net time means time excluding time spent in called {$templatesAnd} functions.</p>
+                <table>
+                    <thead>
+                        <tr>
+                            <th>module</th>
+                            <th>line</th>
+                            <th>instruction</th>
+                            <th>count</th>
+                            <th>average time (gross/ms)</th>
+                            <th>total time (gross/ms)</th>
+                            <th>average time (net/ms)</th>
+                            <th>total time (net/ms)</th>
+                        </tr>
+                    </thead>
+                    <tbody>
+                        <xsl:for-each select="fn"> 
+                            <xsl:sort select="number(@t-sum-net)" order="descending"/>
+                            <tr>
+                                <td><a href="{@file}">{tokenize(@file, '/')[last()]}</a></td>
+                                <td align="right">{@line}</td>
+                                <td>{@construct, @name, @match}</td>
+                                <td align="right">{format-number(@count, ',##0')}</td>
+                                <td align="right">{format-number(@t-avg, '#0.000')}</td>
+                                <td align="right">{format-number(@t-sum, ',##0.000')}</td>
+                                <td align="right">{format-number(@t-avg-net, '#0.000')}</td>
+                                <td align="right">{format-number(@t-sum-net, ',##0.000')}</td>
+                            </tr>
+                        </xsl:for-each>
+                    </tbody>
+                </table>
+            </body>
+        </html>
+    </xsl:template>
+</xsl:stylesheet>

net/sf/saxon/data/xpath-functions.xsd

 <?xml version="1.0" encoding="UTF-8"?>
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
+           elementFormDefault="qualified"
     xmlns:fn="http://www.w3.org/2005/xpath-functions"
     xmlns:j="http://www.w3.org/2005/xpath-functions"
     targetNamespace="http://www.w3.org/2005/xpath-functions">

net/sf/saxon/dom/AttrOverNodeInfo.java

 ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
-// Copyright (c) 2017 Saxonica Limited.
+// Copyright (c) 2018 Saxonica Limited.
 // This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0.
 // If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 // This Source Code Form is "Incompatible With Secondary Licenses", as defined by the Mozilla Public License, v. 2.0.
@@ -86,7 +86,7 @@ public class AttrOverNodeInfo extends NodeOverNodeInfo implements Attr {
      */
 
     public NodeList getChildNodes() {
-        List<Node> list = new ArrayList<Node>(1);
+        List<Node> list = new ArrayList<>(1);
         list.add(getFirstChild());
         return new DOMNodeList(list);
     }