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# Binary and automatically generated files
*.o
*.a
andi
andi_*
randomSeed.dat
seedms
testRMQ
src/config.h
src/stamp-h1
src/config.hin
src/config.hin~

#docs
docs/doxygen_sqlite3.db
docs/html/*
docs/latex/*
docs/andi.1
*.aux
*.auxlock
*.dep
*.dpth
*.toc
*.out
*.pdf
*.backup
*.bbl
*.blg
!andi-manual.pdf

*.in
!docs/andi.1.in
!docs/manual/version.tex.in
docs/manual/version.tex
*.log
**/Makefile
configure.scan
config.status
depcomp
install-sh
aclocal.m4
**/.deps/
autom4te.cache/
README
ChangeLog
missing
compile
configure
ar-lib
src/.dirstamp

# test files
*.fasta
cachegrind*
callgrind*
test.trs
test-driver
test_esa
test_seq
test_fasta
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test_process
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*.trs

# Coverage
*.gcda
*.gcno
*.gcov


andi.sublime-*

# for legacy git only:
libs/RMQ/.deps/
libs/RMQ/Makefile
Makefile

# Profiling:
gmon.out
profile