Commit 4d6c0399 authored by Sascha Steinbiss's avatar Sascha Steinbiss
Browse files

New upstream version 2.13.3+ds

parent 897a8148

ariba/tb.py

+2 −2
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@@ -212,8 +212,8 @@ def write_prepareref_metadata_file(mutations, outfile): 


def make_prepareref_files(outprefix):

    genbank_file = os.path.join(data_dir, 'NC_000962.3.gb')

    mut_to_drug_json = os.path.join(data_dir, 'panel.20181221.json')

    panel_txt_file = os.path.join(data_dir, 'panel.20181221.txt')

    mut_to_drug_json = os.path.join(data_dir, 'panel.20190102.json')

    panel_txt_file = os.path.join(data_dir, 'panel.20190102.txt')

    fasta_out = outprefix + '.fa'

    tsv_out = outprefix + '.tsv'

ariba/tb_data/panel.20190102.json

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ariba/tb_data/panel.20190102.txt

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setup.py

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@@ -55,7 +55,7 @@ vcfcall_mod = Extension( 
setup(

    ext_modules=[minimap_mod, fermilite_mod, vcfcall_mod],

    name='ariba',

    version='2.13.2',

    version='2.13.3',

    description='ARIBA: Antibiotic Resistance Identification By Assembly',

    packages = find_packages(),

    package_data={'ariba': ['test_run_data/*', 'tb_data/*']},