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Commits on Source (3)
# Change Log
[v2.14.4](https://github.com/sanger-pathogens/ariba/tree/v2.14.4) (2019-09-24)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.3...v2.14.4)
**Fixed bugs:**
- ARGannot download fails [\#281](https://github.com/sanger-pathogens/ariba/issues/281)
[v2.14.3](https://github.com/sanger-pathogens/ariba/tree/v2.14.3) (2019-08-23)
[Full Changelog](https://github.com/sanger-pathogens/ariba/compare/v2.14.2...v2.14.3)
......
......@@ -277,13 +277,12 @@ class RefGenesGetter:
except:
raise Error('Error mkdir/chdir ' + tmpdir)
zipfile = 'arg-annot-database_doc.zip'
common.download_file('http://www.mediterranee-infection.com/arkotheque/client/ihumed/_depot_arko/articles/304/arg-annot-database_doc.zip', zipfile, max_attempts=self.max_download_attempts, sleep_time=self.sleep_time, verbose=True)
common.syscall('unzip ' + zipfile)
downloadfile = 'arg-annot-database_doc'
common.download_file('https://www.mediterranee-infection.com/wp-content/uploads/2019/09/ARG-ANNOT_NT_V6_July2019.txt', downloadfile, max_attempts=self.max_download_attempts, sleep_time=self.sleep_time, verbose=True)
os.chdir(current_dir)
print('Extracted files.')
genes_file = os.path.join(tmpdir, 'Database Nt Sequences File.txt')
genes_file = os.path.join(tmpdir, downloadfile)
final_fasta = outprefix + '.fa'
final_tsv = outprefix + '.tsv'
......
ariba (2.14.4+ds-1) unstable; urgency=medium
* New upstream release.
-- Sascha Steinbiss <satta@debian.org> Thu, 26 Sep 2019 10:32:46 +0200
ariba (2.14.3+ds-1) unstable; urgency=medium
* New upstream release.
......
......@@ -4,7 +4,7 @@ Last-Update: 2019-09-09
--- a/setup.py
+++ b/setup.py
@@ -57,7 +57,43 @@
version='2.14.3',
version='2.14.4',
description='ARIBA: Antibiotic Resistance Identification By Assembly',
packages = find_packages(),
- package_data={'ariba': ['test_run_data/*', 'tb_data/*']},
......
......@@ -55,7 +55,7 @@ vcfcall_mod = Extension(
setup(
ext_modules=[minimap_mod, fermilite_mod, vcfcall_mod],
name='ariba',
version='2.14.3',
version='2.14.4',
description='ARIBA: Antibiotic Resistance Identification By Assembly',
packages = find_packages(),
package_data={'ariba': ['test_run_data/*', 'tb_data/*']},
......