debian/changelog

-autodocksuite (4.2.6-7) UNRELEASED; urgency=medium
+autodocksuite (4.2.6-7) unstable; urgency=medium
 
+  [ Jelmer Vernooij ]
   * Use secure copyright file specification URI.
   * Trim trailing whitespace.
 
- -- Jelmer Vernooij <jelmer@debian.org>  Sat, 20 Oct 2018 13:04:28 +0000
+  [ Andreas Tille ]
+  * Use 2to3 to port from Python2 to Python3
+    Closes: #942909
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+  * Remove trailing whitespace in debian/copyright
+  * Remove trailing whitespace in debian/rules
+  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
+  * debian/copyright: use spaces rather than tabs to start continuation
+    lines.
+  * Remove obsolete field Name from debian/upstream/metadata (already
+    present in machine-readable debian/copyright).
+
+ -- Andreas Tille <tille@debian.org>  Fri, 10 Jan 2020 15:30:43 +0100
 
 autodocksuite (4.2.6-6) unstable; urgency=medium
 
@@ -264,4 +279,3 @@ autodocksuite (4.0.1-1) unstable; urgency=low
   * Initial release (Closes: #434654)
 
  -- Steffen Moeller <moeller@debian.org>  Mon, 23 Jul 2007 16:41:48 +0200
-

debian/compat

-11

debian/control

@@ -6,9 +6,9 @@ Uploaders: Steffen Moeller <moeller@debian.org>,
            Thorsten Alteholz <debian@alteholz.de>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
-               python
-Standards-Version: 4.2.1
+Build-Depends: debhelper-compat (= 12),
+               python3 <!nocheck>
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/autodocksuite
 Vcs-Git: https://salsa.debian.org/med-team/autodocksuite.git
 Homepage: http://autodock.scripps.edu/

debian/patches/series

 create_fake_autoreconf_files.patch
 csh2bash.patch
 mayhem.patch
+2to3.patch

debian/rules

@@ -45,8 +45,10 @@ override_dh_auto_clean:
 	find . -name "*.pyc" -delete
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	dh_auto_test --sourcedirectory=autodock
 	dh_auto_test --sourcedirectory=autogrid
+endif
 
 override_dh_install-indep:
 	dh_install -i

debian/tests/control

 Tests: run-unit-test
-Depends: @, python
+Depends: @, python3
 Restrictions: allow-stderr

debian/tests/run-unit-test

 #!/bin/sh -e
 pkg=autodocksuite
-if [ "$ADTTMP" = "" ] ; then
-  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
 
 mkdir -p autodock
 cd autodock
 cp -a /usr/share/autodock/Tests/* .
 rm -f test_*.dlg
-python ./test_autodock4.py -d . -e /usr/bin/autodock4 -o . ;
+python3 ./test_autodock4.py -d . -e /usr/bin/autodock4 -o . ;
 
 cd ..
 mkdir -p autogrid
 cd autogrid
 cp -a /usr/share/autogrid/Tests/* .
-python ./test_autogrid4.py -d . -e /usr/bin/autogrid4 -o .
+python3 ./test_autogrid4.py -d . -e /usr/bin/autogrid4 -o .
 

debian/upstream/metadata

-Donation: "http://autodock.scripps.edu/downloads/\
- autodock-registration/autodock-4-2-download-page/"
-Name: AutoDock
+Donation: http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/
 Reference:
 - Author: >
     Garrett M. Morris and Ruth Huey and William Lindstrom and Michel