Skip to content

Commits on Source 10

Expand all Show whitespace changes
Inline Side-by-side
.gitignore
View file @ ab9d5e8f
*DS_STORE
include/BALL/BALL.doc
contrib/*
*.o
......@@ -12,6 +13,7 @@ moc_*.C
*.aux
*.bbl
*.blg
*.qm
.Dependencies
lib/*
build/*
......@@ -30,9 +32,8 @@ source/libBALL.objects
source/libVIEW.objects
source/qt.version
include/BALL/VIEW/UIC/*
.idea
.project
.cproject
data/BALLView/translations/BALLView.de_DE.qm
data/BALLView/translations/BALLView.zh_TW.qm
source/TEST/data/SideChainPlacementProcessor_test_output_pre_1.pdb
CMakeLists.txt.user
CMakeLists.txt
View file @ ab9d5e8f
This diff is collapsed.
COPYRIGHT
View file @ ab9d5e8f
......@@ -3,8 +3,7 @@
bioinformatics.
Copyright (C) Andreas Hildebrandt, Oliver Kohlbacher, Hans-Peter
Lenhof, and others 1996-2012
Lenhof, Anna Katharina Hildebrandt, and others 1996-2012
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
......@@ -17,13 +16,13 @@
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library (BALL/source/LICENSE); if not, write
to the Free Software Foundation, Inc., 59 Temple Place, Suite 330,
Boston, MA 02111-1307 USA
License along with this library (LICENSE); if not, write to the
Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
Boston, MA 02110-1301 USA
You can contact the authors by electronic mail
Andreas Hildebrandt: Andreas.Hildebrandt@uni-mainz.de
Andreas Hildebrandt: andreas.hildebrandt@uni-mainz.de
Oliver Kohlbacher: oliver.kohlbacher@uni-tuebingen.de
......
ChangeLog
View file @ ab9d5e8f
BALL ChangeLog
BALL Changelog
The ChangeLog for BALL >= 1.3 can be found at the following URL:
http://ball-trac.bioinf.uni-sb.de/wiki/ReleaseNotes
The changelog for BALL releases >= 1.3 can be found here:
https://github.com/BALL-Project/ball/wiki/Release-Notes
Older ChangeLogs are located at the following URL:
http://www.ball-project.org/overview/version-history
Please note that these logs are just a list of highlights and by no means complete.
If you are interested in the full range of changes, see the commit log found here:
https://github.com/BALL-Project/ball/releases
source/APPLICATIONS/BALLVIEW/LICENSE → LICENSE
View file @ ab9d5e8f
......@@ -2,8 +2,7 @@
Version 2.1, February 1999
Copyright (C) 1991, 1999 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
......@@ -457,4 +456,4 @@ SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH
DAMAGES.
END OF TERMS AND CONDITIONS
MacOSX/BALLPackage/Applications/BALLView.app/Contents/Info.plist deleted 100644 → 0
View file @ e7dafa12
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist SYSTEM "file://localhost/System/Library/DTDs/PropertyList.dtd">
<plist version="0.9">
<dict>
<key>CFBundleIconFile</key>
<string>BALLView.icns</string>
<key>CFBundlePackageType</key>
<string>APPL</string>
<key>CFBundleGetInfoString</key>
<string>Created by Qt/QMake</string>
<key>CFBundleSignature</key>
<string>ttxt</string>
<key>CFBundleExecutable</key>
<string>BALLView</string>
<key>LSEnvironment</key>
<dict>
<key>BALL_DATA_PATH</key>
<string>/Applications/BALLView.app/Contents/data</string>
<key>PYTHONPATH</key>
<string>/Applications/BALLView.app/Contents/Frameworks:$PYTHONPATH</string>
<key>LANG</key>
<string>en</string>
</dict>
<key>NOTE</key>
<string>Please, do NOT change this file -- It was generated by Qt/QMake.</string>
</dict>
</plist>
MacOSX/BALLPackage/Install_Resources/License.rtf deleted 100644 → 0
View file @ e7dafa12
This diff is collapsed.
MacOSX/BALLView-package-spnav.pmdoc/01ballview-contents.xml deleted 100644 → 0
View file @ e7dafa12
<pkg-contents spec="1.12"><f n="BALLView.app" o="root" g="admin" p="16893" pt="/Users/andreas/BALL_devel/MacOSX/BALLPackage/Applications/BALLView.app" m="true" t="file"><f n="Contents" o="root" g="admin" p="16893"><f n="data" o="root" g="admin" p="16893"><f n="Amber" o="root" g="admin" p="16893"><f n="all.dat" o="root" g="admin" p="33204"/><f n="all.in" o="root" g="admin" p="33204"/><f n="all94.dat" o="root" g="admin" p="33204"/><f n="all_amber94.siz" o="root" g="admin" p="33204"/><f n="all_amino94.dat" o="root" g="admin" p="33204"/><f n="all_amino94.in" o="root" g="admin" p="33204"/><f n="all_aminoct94.dat" o="root" g="admin" p="33204"/><f n="all_aminoct94.in" o="root" g="admin" p="33204"/><f n="all_aminont94.dat" o="root" g="admin" p="33204"/><f n="all_aminont94.in" o="root" g="admin" p="33204"/><f n="all_ct.dat" o="root" g="admin" p="33204"/><f n="all_nt.dat" o="root" g="admin" p="33204"/><f n="all_nuc94.in" o="root" g="admin" p="33204"/><f n="allct.in" o="root" g="admin" p="33204"/><f n="allct94.dat" o="root" g="admin" p="33204"/><f n="allnt.in" o="root" g="admin" p="33204"/><f n="allnt94.dat" o="root" g="admin" p="33204"/><f n="amber91.crg" o="root" g="admin" p="33204"/><f n="amber91.ini" o="root" g="admin" p="33204"/><f n="amber91.types" o="root" g="admin" p="33204"/><f n="amber91S.ini" o="root" g="admin" p="33204"/><f n="amber94.crg" o="root" g="admin" p="33204"/><f n="amber94.ini" o="root" g="admin" p="33204"/><f n="amber94.siz" o="root" g="admin" p="33204"/><f n="amber94.types" o="root" g="admin" p="33204"/><f n="amber94_all.siz" o="root" g="admin" p="33204"/><f n="amber94_ct.siz" o="root" g="admin" p="33204"/><f n="amber94_nt.siz" o="root" g="admin" p="33204"/><f n="amber94_type_radii.dat" o="root" g="admin" p="33204"/><f n="amber94gly.ini" o="root" g="admin" p="33204"/><f n="amber96.ini" o="root" g="admin" p="33204"/><f n="amber_types.rul" o="root" g="admin" p="33204"/><f n="AmberNames.dat" o="root" g="admin" p="33204"/><f n="atom_types.dat" o="root" g="admin" p="33204"/><f n="converter" o="root" g="admin" p="16893"><f n="amberparser.py" o="root" g="admin" p="33204"/><f n="parametrization.py" o="root" g="admin" p="33204"/><f n="parmConverter.py" o="root" g="admin" p="33277"/></f><f n="parm89a.dat" o="root" g="admin" p="33204"/><f n="parm91.dat" o="root" g="admin" p="33204"/><f n="parm91S.dat" o="root" g="admin" p="33204"/><f n="parm94.dat" o="root" g="admin" p="33204"/><f n="parm96.dat" o="root" g="admin" p="33204"/></f><f n="atomtyping" o="root" g="admin" p="16893"><f n="AMBERTypes.dat" o="root" g="admin" p="33204"/><f n="GAFFTypes.dat" o="root" g="admin" p="33204"/><f n="SYBYLTypes.dat" o="root" g="admin" p="33204"/></f><f n="BALLView" o="root" g="admin" p="16893"><f n="shortcuts_12.txt" o="root" g="admin" p="33204"/><f n="shortcuts_13.txt" o="root" g="admin" p="33204"/></f><f n="bond_lengths" o="root" g="admin" p="16893"><f n="bond_lengths.db" o="root" g="admin" p="33204"/><f n="bond_lengths_mmff94.ini" o="root" g="admin" p="33204"/><f n="BondOrder.xml" o="root" g="admin" p="33204"/><f n="BondOrderGAFF.xml" o="root" g="admin" p="33204"/></f><f n="bondtyping" o="root" g="admin" p="16893"><f n="atomtypes.xml" o="root" g="admin" p="33204"/><f n="GAFFbondangles.ini" o="root" g="admin" p="33204"/></f><f n="charges" o="root" g="admin" p="16893"><f n="amber91.crg" o="root" g="admin" p="33204"/><f n="amber94.crg" o="root" g="admin" p="33204"/><f n="charmm.crg" o="root" g="admin" p="33204"/><f n="PARSE.crg" o="root" g="admin" p="33204"/><f n="PARSE.dat" o="root" g="admin" p="33204"/></f><f n="CHARMM" o="root" g="admin" p="16893"><f n="charmm2ini" o="root" g="admin" p="33277"/><f n="CHARMMNames.dat" o="root" g="admin" p="33204"/><f n="CHARMMTypes.dat" o="root" g="admin" p="33204"/><f n="EEF1" o="root" g="admin" p="16893"><f n="param19_eef1.ini" o="root" g="admin" p="33204"/></f><f n="param22.ini" o="root" g="admin" p="33204"/></f><f n="energy" o="root" g="admin" p="16893"><f n="ACE_parameters.dat" o="root" g="admin" p="33204"/><f n="ACE_types.dat" o="root" g="admin" p="33204"/></f><f n="fragments" o="root" g="admin" p="16893"><f n="A.db" o="root" g="admin" p="33204"/><f n="ACE.db" o="root" g="admin" p="33204"/><f n="ALA.db" o="root" g="admin" p="33204"/><f n="ARG.db" o="root" g="admin" p="33204"/><f n="ASN.db" o="root" g="admin" p="33204"/><f n="ASP.db" o="root" g="admin" p="33204"/><f n="Benzene-Skeleton.db" o="root" g="admin" p="33204"/><f n="C.db" o="root" g="admin" p="33204"/><f n="CA.db" o="root" g="admin" p="33204"/><f n="CYS.db" o="root" g="admin" p="33204"/><f n="Editing-Fragments.db" o="root" g="admin" p="33204"/><f n="Fragments.db" o="root" g="admin" p="33204"/><f n="G.db" o="root" g="admin" p="33204"/><f n="GLN.db" o="root" g="admin" p="33204"/><f n="GLU.db" o="root" g="admin" p="33204"/><f n="GLY.db" o="root" g="admin" p="33204"/><f n="HIS.db" o="root" g="admin" p="33204"/><f n="HOH.db" o="root" g="admin" p="33204"/><f n="ILE.db" o="root" g="admin" p="33204"/><f n="Indole-Skeleton.db" o="root" g="admin" p="33204"/><f n="LEU.db" o="root" g="admin" p="33204"/><f n="LYS.db" o="root" g="admin" p="33204"/><f n="MET.db" o="root" g="admin" p="33204"/><f n="MG.db" o="root" g="admin" p="33204"/><f n="Names.Amber.db" o="root" g="admin" p="33204"/><f n="Names.CHARMM.db" o="root" g="admin" p="33204"/><f n="Names.Discover.db" o="root" g="admin" p="33204"/><f n="Names.DNA.db" o="root" g="admin" p="33204"/><f n="Names.Star.db" o="root" g="admin" p="33204"/><f n="Names.XPLOR.db" o="root" g="admin" p="33204"/><f n="NME.db" o="root" g="admin" p="33204"/><f n="PCA.db" o="root" g="admin" p="33204"/><f n="PHE.db" o="root" g="admin" p="33204"/><f n="PRO.db" o="root" g="admin" p="33204"/><f n="Pyrrole-Skeleton.db" o="root" g="admin" p="33204"/><f n="SER.db" o="root" g="admin" p="33204"/><f n="T.db" o="root" g="admin" p="33204"/><f n="THR.db" o="root" g="admin" p="33204"/><f n="TRP.db" o="root" g="admin" p="33204"/><f n="TYR.db" o="root" g="admin" p="33204"/><f n="U.db" o="root" g="admin" p="33204"/><f n="VAL.db" o="root" g="admin" p="33204"/><f n="ZN.db" o="root" g="admin" p="33204"/></f><f n="graphics" o="root" g="admin" p="16893"><f n="assignBondOrders.png" o="root" g="admin" p="33204"/><f n="ballview.xpm" o="andreas" g="staff" p="33188"/><f n="ballview_32x32.xpm" o="andreas" g="staff" p="33188"/><f n="ballview_48x48.xpm" o="andreas" g="staff" p="33188"/><f n="ballview_64x64.xpm" o="andreas" g="staff" p="33188"/><f n="colorize.png" o="root" g="admin" p="33204"/><f n="cursor.png" o="root" g="admin" p="33204"/><f n="delete.png" o="root" g="admin" p="33277"/><f n="down3.png" o="root" g="admin" p="33277"/><f n="download.png" o="root" g="admin" p="33277"/><f n="download.svg" o="andreas" g="staff" p="33188"/><f n="edit.png" o="root" g="admin" p="33204"/><f n="element.png" o="root" g="admin" p="33204"/><f n="element.svg" o="andreas" g="staff" p="33188"/><f n="focus.png" o="root" g="admin" p="33204"/><f n="focus.svg" o="andreas" g="staff" p="33188"/><f n="fullscreen.png" o="root" g="admin" p="33204"/><f n="help.png" o="root" g="admin" p="33204"/><f n="hydrogens.png" o="root" g="admin" p="33204"/><f n="logo.png" o="root" g="admin" p="33277"/><f n="logo.xpm" o="andreas" g="staff" p="33188"/><f n="minimize.png" o="root" g="admin" p="33204"/><f n="move.png" o="root" g="admin" p="33204"/><f n="open.png" o="root" g="admin" p="33277"/><f n="picking.png" o="root" g="admin" p="33204"/><f n="povray.png" o="root" g="admin" p="33204"/><f n="pref.png" o="root" g="admin" p="33277"/><f n="pubchem.png" o="root" g="admin" p="33204"/><f n="pubchem.svg" o="andreas" g="staff" p="33188"/><f n="quickload.png" o="root" g="admin" p="33204"/><f n="quicksave.png" o="root" g="admin" p="33204"/><f n="revert.png" o="root" g="admin" p="33204"/><f n="rotate.png" o="root" g="admin" p="33204"/><f n="ruler.png" o="root" g="admin" p="33204"/><f n="save.png" o="root" g="admin" p="33277"/><f n="screenshot.png" o="root" g="admin" p="33204"/><f n="stop.png" o="root" g="admin" p="33277"/></f><f n="gui-test" o="root" g="admin" p="16893"><f n="selection.btf" o="root" g="admin" p="33204"/><f n="selection.bvp" o="root" g="admin" p="33204"/><f n="tutorial.btf" o="root" g="admin" p="33204"/></f><f n="MMFF94" o="root" g="admin" p="16893"><f n="mmff94.ini" o="root" g="admin" p="33204"/><f n="TYPES.PAR" o="root" g="admin" p="33204"/></f><f n="NMR" o="root" g="admin" p="16893"><f n="equivalent_atoms.dat" o="root" g="admin" p="33204"/><f n="ignore_atoms.dat" o="root" g="admin" p="33204"/><f n="StandardSpectrum.ini" o="root" g="admin" p="33204"/><f n="translate.dat" o="root" g="admin" p="33204"/><f n="WilliamsonAsakura.ini" o="root" g="admin" p="33204"/></f><f n="QSAR" o="root" g="admin" p="16893"><f n="atomic_electron_affinities.data" o="root" g="admin" p="33277"/><f n="atomic_ionization_potentials.data" o="root" g="admin" p="33277"/><f n="atomic_polarizabilities.data" o="root" g="admin" p="33277"/></f><f n="radii" o="root" g="admin" p="16893"><f n="amber94.siz" o="root" g="admin" p="33204"/><f n="PARSE.siz" o="root" g="admin" p="33204"/></f><f n="rotamers" o="root" g="admin" p="16893"><f n="bbdep02.May.lib" o="root" g="admin" p="33204"/><f n="bbdep02.May.sortlib" o="root" g="admin" p="33204"/><f n="bbind02.May.lib" o="root" g="admin" p="33204"/><f n="bbind99.Aug.lib" o="root" g="admin" p="33204"/></f><f n="solvation" o="root" g="admin" p="16893"><f n="bondi-vdw.rul" o="root" g="admin" p="33204"/><f n="bondi.rul" o="root" g="admin" p="33204"/><f n="Claverie-AMBER.ini" o="root" g="admin" p="33204"/><f n="Ooi.ini" o="root" g="admin" p="33204"/><f n="PARSE+ions.rul" o="root" g="admin" p="33204"/><f n="PARSE-ab_initio.rul" o="root" g="admin" p="33204"/><f n="PARSE.rul" o="root" g="admin" p="33204"/><f n="PCM-radii.rul" o="root" g="admin" p="33204"/><f n="RDF-AMBER.ini" o="root" g="admin" p="33204"/></f><f n="solvents" o="root" g="admin" p="16893"><f n="PCM-water.ini" o="root" g="admin" p="33204"/><f n="water.hin" o="root" g="admin" p="33204"/></f><f n="startup.py" o="root" g="admin" p="33204"/><f n="structures" o="root" g="admin" p="16893"><f n="1A1F.pdb" o="root" g="admin" p="33204"/><f n="alaala.dcd" o="root" g="admin" p="33204"/><f n="AlaAla.hin" o="root" g="admin" p="33204"/><f n="bpti.pdb" o="root" g="admin" p="33204"/><f n="DB" o="root" g="admin" p="16893"><f n="create_database.sql" o="root" g="admin" p="33204"/></f><f n="test.btf" o="root" g="admin" p="33277"/></f></f><f n="doc" o="andreas" g="staff" p="16877"><f n="BALLView" o="andreas" g="staff" p="16877"><f n="changelog.html" o="andreas" g="staff" p="33188"/><f n="datasetControl.html" o="andreas" g="staff" p="33188"/><f n="displayProperties.html" o="andreas" g="staff" p="33188"/><f n="geometricControl.html" o="andreas" g="staff" p="33188"/><f n="hotkeys.html" o="andreas" g="staff" p="33188"/><f n="images" o="andreas" g="staff" p="16877"><f n="animation_menu.png" o="andreas" g="staff" p="33188"/><f n="atom_properties.png" o="andreas" g="staff" p="33188"/><f n="bond_properties.png" o="andreas" g="staff" p="33188"/><f n="clip_dialog.png" o="andreas" g="staff" p="33188"/><f n="clipping.png" o="andreas" g="staff" p="33188"/><f n="color_surface1.png" o="andreas" g="staff" p="33188"/><f n="color_surface2.png" o="andreas" g="staff" p="33188"/><f n="contour_surface.png" o="andreas" g="staff" p="33188"/><f n="contour_surface_dialog.png" o="andreas" g="staff" p="33188"/><f n="cs.png" o="andreas" g="staff" p="33188"/><f n="custom_color.png" o="andreas" g="staff" p="33188"/><f n="datasetControl.png" o="andreas" g="staff" p="33188"/><f n="displayProperties.png" o="andreas" g="staff" p="33188"/><f n="distance_grid.png" o="andreas" g="staff" p="33188"/><f n="dots_wireframe.png" o="andreas" g="staff" p="33188"/><f n="dsc_menu.png" o="andreas" g="staff" p="33188"/><f n="element.png" o="andreas" g="staff" p="33188"/><f n="fl-dialog.png" o="andreas" g="staff" p="33188"/><f n="fl.jpg" o="andreas" g="staff" p="33188"/><f n="geometricControl.png" o="andreas" g="staff" p="33188"/><f n="geometricControl_cm.png" o="andreas" g="staff" p="33188"/><f n="gui.png" o="andreas" g="staff" p="33188"/><f n="hbonds.png" o="andreas" g="staff" p="33188"/><f n="hotkeys.png" o="andreas" g="staff" p="33188"/><f n="hydrogens.png" o="andreas" g="staff" p="33188"/><f n="left.png" o="andreas" g="staff" p="33188"/><f n="lights.png" o="andreas" g="staff" p="33188"/><f n="logView.png" o="andreas" g="staff" p="33188"/><f n="mc_context_menu.png" o="andreas" g="staff" p="33188"/><f n="minimize.png" o="andreas" g="staff" p="33188"/><f n="molecularControl.png" o="andreas" g="staff" p="33188"/><f n="molecularControl2.png" o="andreas" g="staff" p="33188"/><f n="network.png" o="andreas" g="staff" p="33188"/><f n="plane.png" o="andreas" g="staff" p="33188"/><f n="resolution.png" o="andreas" g="staff" p="33188"/><f n="right.png" o="andreas" g="staff" p="33188"/><f n="scene.png" o="andreas" g="staff" p="33188"/><f n="scene_preferences_common.png" o="andreas" g="staff" p="33188"/><f n="spacer.png" o="andreas" g="staff" p="33188"/><f n="startup_script1.png" o="andreas" g="staff" p="33188"/><f n="stereo_settings.png" o="andreas" g="staff" p="33188"/><f n="visualise_trajectories.png" o="andreas" g="staff" p="33188"/><f n="volume-dialog.png" o="andreas" g="staff" p="33188"/></f><f n="index.html" o="andreas" g="staff" p="33188"/><f n="logView.html" o="andreas" g="staff" p="33188"/><f n="mm.html" o="andreas" g="staff" p="33188"/><f n="molecularControl.html" o="andreas" g="staff" p="33188"/><f n="pythonInterpreter.html" o="andreas" g="staff" p="33188"/><f n="scene.html" o="andreas" g="staff" p="33188"/><f n="tips.html" o="andreas" g="staff" p="33188"/></f><f n="internal" o="andreas" g="staff" p="16877"><f n="demo01.html" o="andreas" g="staff" p="33188"/><f n="demo02.html" o="andreas" g="staff" p="33188"/><f n="demo03.html" o="andreas" g="staff" p="33188"/><f n="demo04.html" o="andreas" g="staff" p="33188"/><f n="demo05.html" o="andreas" g="staff" p="33188"/><f n="demo06.html" o="andreas" g="staff" p="33188"/><f n="demo07.html" o="andreas" g="staff" p="33188"/><f n="demo08.html" o="andreas" g="staff" p="33188"/><f n="demo09.html" o="andreas" g="staff" p="33188"/><f n="demo10.html" o="andreas" g="staff" p="33188"/><f n="demo11.html" o="andreas" g="staff" p="33188"/><f n="demo12.html" o="andreas" g="staff" p="33188"/><f n="demo13.html" o="andreas" g="staff" p="33188"/><f n="demo14.html" o="andreas" g="staff" p="33188"/><f n="demo15.html" o="andreas" g="staff" p="33188"/><f n="demo16.html" o="andreas" g="staff" p="33188"/><f n="demo17.html" o="andreas" g="staff" p="33188"/><f n="tutorial01.html" o="andreas" g="staff" p="33188"/><f n="tutorial02.html" o="andreas" g="staff" p="33188"/><f n="tutorial03.html" o="andreas" g="staff" p="33188"/><f n="tutorial04.html" o="andreas" g="staff" p="33188"/><f n="tutorial05.html" o="andreas" g="staff" p="33188"/><f n="tutorial06.html" o="andreas" g="staff" p="33188"/><f n="tutorial07.html" o="andreas" g="staff" p="33188"/><f n="tutorial08.html" o="andreas" g="staff" p="33188"/><f n="tutorial09.html" o="andreas" g="staff" p="33188"/><f n="tutorial10.html" o="andreas" g="staff" p="33188"/></f></f><f n="Frameworks" o="root" g="admin" p="16893"><f n="BALLCoremodule.so" o="root" g="admin" p="33277"/><f n="libBALL.dylib" o="root" g="admin" p="33277"/><f n="libboost_iostreams-xgcc40-mt-1_39.dylib" o="root" g="admin" p="33277"/><f n="libboost_system-xgcc40-mt-1_39.dylib" o="root" g="admin" p="33277"/><f n="libboost_thread-xgcc40-mt-1_39.dylib" o="root" g="admin" p="33277"/><f n="libgsl.0.9.0.dylib" o="root" g="admin" p="33277"/><f n="libgslcblas.0.0.0.dylib" o="root" g="admin" p="33277"/><f n="liblpsolve55.dylib" o="root" g="admin" p="33277"/><f n="libVIEW.dylib" o="root" g="admin" p="33277"/><f n="QtCore.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"/><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtCore" o="root" g="admin" p="33277"/></f></f></f><f n="QtGui.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><f n="qt_menu.nib" o="root" g="admin" p="16893"><f n="classes.nib" o="root" g="admin" p="33204"/><f n="info.nib" o="root" g="admin" p="33204"/><f n="keyedobjects.nib" o="root" g="admin" p="33204"/></f></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtGui" o="root" g="admin" p="33277"/></f></f></f><f n="QtOpenGL.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"/><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtOpenGL" o="root" g="admin" p="33277"/></f></f></f><f n="QtSql.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"/><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtSql" o="root" g="admin" p="33277"/></f></f></f><f n="QtTest.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"/><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtTest" o="root" g="admin" p="33277"/></f></f></f><f n="QtXml.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"/><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtXml" o="root" g="admin" p="33277"/></f></f></f><f n="sip.so" o="root" g="admin" p="33277"/><f n="VIEWmodule.so" o="root" g="admin" p="33277"/></f><f n="Info.plist" o="root" g="admin" p="33204"/><f n="MacOS" o="root" g="admin" p="16893"><f n="BALLView" o="root" g="admin" p="33277"/></f><f n="PkgInfo" o="root" g="admin" p="33204"/><f n="PlugIns" o="root" g="admin" p="16893"><f n="accessible" o="root" g="admin" p="16893"><f n="libqtaccessiblewidgets.dylib" o="root" g="admin" p="33277"/></f><f n="codecs" o="root" g="admin" p="16893"><f n="libqcncodecs.dylib" o="root" g="admin" p="33277"/><f n="libqjpcodecs.dylib" o="root" g="admin" p="33277"/><f n="libqkrcodecs.dylib" o="root" g="admin" p="33277"/><f n="libqtwcodecs.dylib" o="root" g="admin" p="33277"/></f><f n="imageformats" o="root" g="admin" p="16893"><f n="libqgif.dylib" o="root" g="admin" p="33277"/><f n="libqico.dylib" o="root" g="admin" p="33277"/><f n="libqjpeg.dylib" o="root" g="admin" p="33277"/><f n="libqmng.dylib" o="root" g="admin" p="33277"/><f n="libqtiff.dylib" o="root" g="admin" p="33277"/></f><f n="sqldrivers" o="root" g="admin" p="16893"><f n="libqsqlite.dylib" o="root" g="admin" p="33277"/><f n="libqsqlodbc.dylib" o="root" g="admin" p="33277"/></f></f><f n="Resources" o="root" g="admin" p="16893"><f n="BALLView.icns" o="root" g="admin" p="33204"/><f n="qt.conf" o="root" g="admin" p="33204"/></f></f></f></pkg-contents>
\ No newline at end of file
MacOSX/BALLView-package-spnav.pmdoc/01ballview.xml deleted 100644 → 0
View file @ e7dafa12
<pkgref spec="1.12" uuid="D8CAA537-F61F-4560-8FCB-DD433FBFE642"><config><identifier>org.ballview.ballview13.ballview.pkg</identifier><version>3</version><description></description><post-install type="none"/><requireAuthorization/><installFrom relative="true" mod="true" includeRoot="true">BALLPackage/Applications/BALLView.app</installFrom><installTo>/Applications</installTo><flags><followSymbolicLinks/></flags><packageStore type="internal"></packageStore><mod>parent</mod><mod>locationType</mod><mod>installTo</mod><mod>installFrom.isAbsoluteType</mod><mod>relocatable</mod><mod>version</mod><mod>includeRoot</mod><mod>installFrom.path</mod><mod>installFrom.isRelativeType</mod><mod>identifier</mod></config><contents><file-list>01ballview-contents.xml</file-list><filter>/CVS$</filter><filter>/\.svn$</filter><filter>/\.cvsignore$</filter><filter>/\.cvspass$</filter><filter>/\.DS_Store$</filter></contents></pkgref>
\ No newline at end of file
MacOSX/BALLView-package-spnav.pmdoc/02plugins-contents.xml deleted 100644 → 0
View file @ e7dafa12
<pkg-contents spec="1.12"><f n="Plugins" o="andreas" g="staff" p="16877" pt="/Users/andreas/BALL_devel/MacOSX/Plugins" m="false" t="file"><f n="pluginSpaceNavigator.dylib" o="andreas" g="staff" p="33277"/></f></pkg-contents>
\ No newline at end of file
MacOSX/BALLView-package-spnav.pmdoc/02plugins.xml deleted 100644 → 0
View file @ e7dafa12
<pkgref spec="1.12" uuid="31B96EAF-A149-48DE-850F-988CA5993862"><config><identifier>org.ballview.ballview13Rc2.plugins.pkg</identifier><version>2</version><description></description><post-install type="none"/><requireAuthorization/><installFrom relative="true" mod="true">Plugins</installFrom><installTo mod="true">/Applications/BALLView.app/Contents/PlugIns/</installTo><flags><followSymbolicLinks/></flags><packageStore type="internal"></packageStore><mod>parent</mod><mod>version</mod><mod>includeRoot</mod><mod>installTo.path</mod><mod>installTo</mod><mod>installFrom.path</mod></config><contents><file-list>02plugins-contents.xml</file-list><filter>/CVS$</filter><filter>/\.svn$</filter><filter>/\.cvsignore$</filter><filter>/\.cvspass$</filter><filter>/\.DS_Store$</filter></contents></pkgref>
\ No newline at end of file
MacOSX/BALLView-package-spnav.pmdoc/index.xml deleted 100644 → 0
View file @ e7dafa12
<pkmkdoc spec="1.12"><properties><title>BALLView 1.3 RC2</title><build>/Users/andreas/Desktop/BALLView 1.3 RC2.pkg</build><organization>org.ballview</organization><userSees ui="custom"/><min-target os="3"/><domain anywhere="true"/></properties><distribution><versions min-spec="1.000000"/><scripts></scripts></distribution><contents><choice title="BALLView" id="choice18" starts_selected="true" starts_enabled="false" starts_hidden="false"><pkgref id="org.ballview.ballview13.ballview.pkg"/></choice><choice title="Plugins" id="choice54" tooltip="The Space Navigator Plugin for BALLView" description="This plugin allows to use the 3DConnexion Space Navigator devices for controlling BALLView. Please make sure that the driver is installed correctly before activating the plugin. To start the plugin, choose &quot;Tools->Load Plugin&quot;, click on the SpaceNavigator entry and hit &quot;activate&quot;." starts_selected="true" starts_enabled="true" starts_hidden="false"><customLoc>/Applications/BALLView.app/Contents/PlugIns/</customLoc><pkgref id="org.ballview.ballview13Rc2.plugins.pkg"/></choice></contents><resources bg-scale="none" bg-align="topleft"><locale lang="English"><resource relative="true" mod="true" type="background">BALLPackage/Install_Resources/background.jpg</resource><resource relative="true" mod="true" type="license">BALLPackage/Install_Resources/License.rtf</resource><resource relative="true" mod="true" type="welcome">BALLPackage/Install_Resources/Welcome.rtf</resource><resource mime-type="text/rtf" kind="embedded" type="conclusion"><![CDATA[{\rtf1\ansi\ansicpg1252\cocoartf949\cocoasubrtf460
{\fonttbl\f0\fnil\fcharset0 LucidaGrande;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\ql\qnatural\pardirnatural
\f0\fs26 \cf0 NOTE: if you chose to install BALLView on a non-standard volume, you may have to edit the variables\
\
\b BALL_DATA_PATH
\b0 \
\
and\
\
\b PYTHONPATH\
\b0 \
in\
\
\b BALLView.app/Contents/Info.plist\
\b0 \
to point to the correct install location!}]]></resource></locale></resources><flags/><postinstall><action id="com.apple.packagemaker.actions.showfile"><value>org.ballview.ballview13Beta2.ballview.pkg.ballviewapp</value><type>component</type></action></postinstall><item type="file">01ballview.xml</item><item type="file">02plugins.xml</item><mod>properties.customizeOption</mod><mod>properties.title</mod><mod>postinstallActions.actions</mod></pkmkdoc>
\ No newline at end of file
MacOSX/BALLView-package.pmdoc/01ballview-contents.xml deleted 100644 → 0
View file @ e7dafa12
<pkg-contents spec="1.12"><f n="BALLView.app" o="root" g="admin" p="16893" pt="/Users/andreas/BALL_devel/MacOSX/BALLPackage/Applications/BALLView.app" m="true" t="file"><f n="Contents" o="root" g="admin" p="16893"><f n="data" o="root" g="admin" p="16893"><f n="Amber" o="root" g="admin" p="16893"><f n="all.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_amber94.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_amino94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_amino94.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_aminoct94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_aminoct94.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_aminont94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_aminont94.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_ct.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_nt.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="all_nuc94.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="allct.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="allct94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="allnt.in" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="allnt94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber91.crg" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber91.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber91.types" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber91S.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94.crg" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94.types" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94_all.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94_ct.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94_nt.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94_type_radii.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94gly.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber96.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber_types.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="AmberNames.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="atom_types.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="converter" o="root" g="admin" p="16893"><f n="amberparser.py" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="parametrization.py" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="parmConverter.py" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="parm89a.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="parm91.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="parm91S.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="parm94.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="parm96.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="atomtyping" o="root" g="admin" p="16893"><f n="AMBERTypes.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="GAFFTypes.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="SYBYLTypes.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="BALLView" o="root" g="admin" p="16893"><f n="shortcuts_12.txt" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="shortcuts_13.txt" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="bond_lengths" o="root" g="admin" p="16893"><f n="bond_lengths.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="bond_lengths_mmff94.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="BondOrder.xml" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="BondOrderGAFF.xml" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="bondtyping" o="root" g="admin" p="16893"><f n="atomtypes.xml" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="GAFFbondangles.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="charges" o="root" g="admin" p="16893"><f n="amber91.crg" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="amber94.crg" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="charmm.crg" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PARSE.crg" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PARSE.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="CHARMM" o="root" g="admin" p="16893"><f n="charmm2ini" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="CHARMMNames.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="CHARMMTypes.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="EEF1" o="root" g="admin" p="16893"><f n="param19_eef1.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="param22.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="energy" o="root" g="admin" p="16893"><f n="ACE_parameters.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ACE_types.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="fragments" o="root" g="admin" p="16893"><f n="A.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ACE.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ALA.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ARG.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ASN.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ASP.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Benzene-Skeleton.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="C.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="CA.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="CYS.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Editing-Fragments.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Fragments.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="G.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="GLN.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="GLU.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="GLY.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="HIS.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="HOH.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ILE.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Indole-Skeleton.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="LEU.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="LYS.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="MET.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="MG.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Names.Amber.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Names.CHARMM.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Names.Discover.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Names.DNA.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Names.Star.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Names.XPLOR.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="NME.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PCA.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PHE.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PRO.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Pyrrole-Skeleton.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="SER.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="T.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="THR.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="TRP.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="TYR.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="U.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="VAL.db" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ZN.db" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="graphics" o="root" g="admin" p="16893"><f n="assignBondOrders.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="colorize.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="cursor.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="delete.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="down3.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="download.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="edit.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="element.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="focus.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="fullscreen.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="help.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="hydrogens.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="logo.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="minimize.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="move.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="open.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="picking.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="povray.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="pref.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="pubchem.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="quickload.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="quicksave.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="revert.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="rotate.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ruler.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="save.png" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="screenshot.png" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="stop.png" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="gui-test" o="root" g="admin" p="16893"><f n="selection.btf" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="selection.bvp" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="tutorial.btf" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="MMFF94" o="root" g="admin" p="16893"><f n="mmff94.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="TYPES.PAR" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="NMR" o="root" g="admin" p="16893"><f n="equivalent_atoms.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="ignore_atoms.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="StandardSpectrum.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="translate.dat" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="WilliamsonAsakura.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="QSAR" o="root" g="admin" p="16893"><f n="atomic_electron_affinities.data" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="atomic_ionization_potentials.data" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="atomic_polarizabilities.data" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="radii" o="root" g="admin" p="16893"><f n="amber94.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PARSE.siz" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="rotamers" o="root" g="admin" p="16893"><f n="bbdep02.May.lib" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="bbdep02.May.sortlib" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="bbind02.May.lib" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="bbind99.Aug.lib" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="solvation" o="root" g="admin" p="16893"><f n="bondi-vdw.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="bondi.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Claverie-AMBER.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="Ooi.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PARSE+ions.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PARSE-ab_initio.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PARSE.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PCM-radii.rul" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="RDF-AMBER.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="solvents" o="root" g="admin" p="16893"><f n="PCM-water.ini" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="water.hin" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="startup.py" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="structures" o="root" g="admin" p="16893"><f n="1A1F.pdb" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="alaala.dcd" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="AlaAla.hin" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="bpti.pdb" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="DB" o="root" g="admin" p="16893"><f n="create_database.sql" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><f n="test.btf" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="Frameworks" o="root" g="admin" p="16893"><f n="BALLmodule.so" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libBALL.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libboost_iostreams-xgcc40-mt-1_37.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libboost_system-xgcc40-mt-1_37.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libboost_thread-xgcc40-mt-1_37.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libgsl.0.9.0.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libgslcblas.0.0.0.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="liblpsolve55.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libVIEW.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="QtCore.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><mod>mode</mod></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtCore" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="QtGui.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><f n="qt_menu.nib" o="root" g="admin" p="16893"><f n="classes.nib" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="info.nib" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="keyedobjects.nib" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtGui" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="QtOpenGL.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><mod>mode</mod></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtOpenGL" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="QtSql.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><mod>mode</mod></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtSql" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="QtTest.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><mod>mode</mod></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtTest" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="QtXml.framework" o="root" g="admin" p="16893"><f n="Resources" o="root" g="admin" p="16893"><mod>mode</mod></f><f n="Versions" o="root" g="admin" p="16893"><f n="4" o="root" g="admin" p="16893"><f n="QtXml" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="sip.so" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="Info.plist" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="MacOS" o="root" g="admin" p="16893"><f n="BALLView" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="PkgInfo" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="PlugIns" o="root" g="admin" p="16893"><f n="accessible" o="root" g="admin" p="16893"><f n="libqtaccessiblewidgets.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="codecs" o="root" g="admin" p="16893"><f n="libqcncodecs.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqjpcodecs.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqkrcodecs.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqtwcodecs.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="imageformats" o="root" g="admin" p="16893"><f n="libqgif.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqico.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqjpeg.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqmng.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqtiff.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><f n="sqldrivers" o="root" g="admin" p="16893"><f n="libqsqlite.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><f n="libqsqlodbc.dylib" o="root" g="admin" p="33277"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><f n="Resources" o="root" g="admin" p="16893"><f n="BALLView.icns" o="root" g="admin" p="33204"><mod>mode</mod></f><f n="qt.conf" o="root" g="admin" p="33204"><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f><mod>mode</mod></f></pkg-contents>
\ No newline at end of file
MacOSX/BALLView-package.pmdoc/01ballview.xml deleted 100644 → 0
View file @ e7dafa12
<pkgref spec="1.12" uuid="D8CAA537-F61F-4560-8FCB-DD433FBFE642"><config><identifier>org.ballview.ballview13Beta2.ballview.pkg</identifier><version>2</version><description></description><post-install type="none"/><requireAuthorization/><installFrom relative="true" includeRoot="true">BALLPackage/Applications/BALLView.app</installFrom><installTo relocatable="true">/Applications</installTo><flags><followSymbolicLinks/></flags><packageStore type="internal"></packageStore><mod>parent</mod><mod>version</mod><mod>includeRoot</mod><mod>installFrom.isRelativeType</mod><mod>installTo</mod></config><contents><file-list>01ballview-contents.xml</file-list><component id="org.ballview.ballview13Beta2.ballview.pkg.ballviewapp" path="/Users/andreas/BALL_devel/MacOSX/BALLPackage/Applications/BALLView.app" isRelocatable="true"><locator-info><token title="pkmk-token-2"/></locator-info></component><filter>/CVS$</filter><filter>/\.svn$</filter><filter>/\.cvsignore$</filter><filter>/\.cvspass$</filter><filter>/\.DS_Store$</filter></contents></pkgref>
\ No newline at end of file
MacOSX/BALLView-package.pmdoc/index.xml deleted 100644 → 0
View file @ e7dafa12
<pkmkdoc spec="1.12"><properties><title>BALLView 1.3 beta2</title><build>/Users/andreas/Desktop/BALLView 1.3 beta2.mpkg</build><organization>org.ballview</organization><userSees ui="easy"/><min-target os="2"/><domain anywhere="true"/></properties><distribution><versions min-spec="1.000000"/><scripts></scripts></distribution><contents><choice title="BALLView" id="choice18" starts_selected="true" starts_enabled="true" starts_hidden="false"><pkgref id="org.ballview.ballview13Beta2.ballview.pkg"/></choice></contents><resources bg-scale="none" bg-align="topleft"><locale lang="English"><resource relative="true" mod="true" type="background">BALLPackage/Install_Resources/background.jpg</resource><resource relative="true" mod="true" type="license">BALLPackage/Install_Resources/License.rtf</resource><resource relative="true" mod="true" type="welcome">BALLPackage/Install_Resources/Welcome.rtf</resource><resource mime-type="text/rtf" kind="embedded" type="conclusion"><![CDATA[{\rtf1\ansi\ansicpg1252\cocoartf949\cocoasubrtf460
{\fonttbl\f0\fnil\fcharset0 LucidaGrande;}
{\colortbl;\red255\green255\blue255;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\ql\qnatural\pardirnatural
\f0\fs26 \cf0 NOTE: if you chose to install BALLView on a non-standard volume, you may have to edit the variables\
\
\b BALL_DATA_PATH
\b0 \
\
and\
\
\b PYTHONPATH\
\b0 \
in\
\
\b BALLView.app/Contents/Info.plist\
\b0 \
to point to the correct install location!}]]></resource></locale></resources><flags/><postinstall><action id="com.apple.packagemaker.actions.showfile"><value>org.ballview.ballview13Beta2.ballview.pkg.ballviewapp</value><type>component</type></action></postinstall><item type="file">01ballview.xml</item><mod>postinstallActions.actions</mod><mod>properties.title</mod></pkmkdoc>
\ No newline at end of file
MacOSX/Info.plist.app deleted 100644 → 0
View file @ e7dafa12
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist SYSTEM "file://localhost/System/Library/DTDs/PropertyList.dtd">
<plist version="0.9">
<dict>
<key>CFBundleIconFile</key>
<string>BALLView.icns</string>
<key>CFBundlePackageType</key>
<string>APPL</string>
<key>CFBundleGetInfoString</key>
<string>Created by Qt/QMake</string>
<key>CFBundleSignature</key>
<string>ttxt</string>
<key>CFBundleExecutable</key>
<string>BALLView</string>
<key>LSEnvironment</key>
<dict>
<key>BALL_DATA_PATH</key>
<string>/Applications/BALLView.app/Contents/data</string>
<key>PYTHONPATH</key>
<string>/Applications/BALLView.app/Contents/Frameworks:$PYTHONPATH</string>
<key>LANG</key>
<string>en</string>
</dict>
<key>NOTE</key>
<string>Please, do NOT change this file -- It was generated by Qt/QMake.</string>
</dict>
</plist>
MacOSX/fixbundleframeworks.sh deleted 100755 → 0
View file @ e7dafa12
#!/bin/bash
## This script finds all .dylibs in a given directory, lists their dynamic load dependencies,
## tries to detect them in the same directory hierarchy, and, if found, prepares their load
## dependencies for bundling
search_path=$1
for lib in $(find "$search_path" -name \*.dylib -o -name \*.so); do
for cur_name in $(otool -L $lib | awk '{if (NR >= 2) print $1}' | grep -v @executable_path); do
cur_base_name=$(basename $cur_name)
in_bundle_name=$(find "$search_path" -name $cur_base_name)
in_bundle_base_name=$(echo "$in_bundle_name" | sed "s_^.*/Contents/\(.*\)_\1_g")
if [ -n "$in_bundle_name" -a -f "$in_bundle_name" ]; then
target=$in_bundle_name
a=$(readlink $target);
if test $a; then
target=$a
fi;
if [ "$cur_base_name" == "$(basename $lib)" ]; then
install_name_tool -id @executable_path/../Frameworks/$(basename $target) $lib
else
install_name_tool -change $cur_name @executable_path/../$in_bundle_base_name $lib
fi
fi
done;
done