debian/changelog

-bamtools (2.5.1+dfsg-1) UNRELEASED; urgency=medium
+bamtools (2.5.1+dfsg-1) unstable; urgency=medium
 
+  [ Andreas Tille ]
   * New upstream version
   * cme fix dpkg-control
   * debhelper 11
 
- -- Andreas Tille <tille@debian.org>  Tue, 06 Feb 2018 10:08:37 +0100
+  [ Michael R. Crusoe ]
+  * Make release ready with cme fix dpkg
+  * fix built in tests
+  * debian/rules: remove unused variables; drop custom library install; add
+    hardening
+
+ -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 02 Apr 2018 09:47:32 -0700
 
 bamtools (2.4.1+dfsg-2) unstable; urgency=medium
 

debian/control

 Source: bamtools
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-Uploaders: Michael R. Crusoe <crusoe@ucdavis.edu>,
+Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>,
            Andreas Tille <tille@debian.org>,
            Kevin Murray <spam@kdmurray.id.au>,
            Dominique Belhachemi <domibel@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper (>= 11),
                d-shlibs (>= 0.56),
                cmake,
                zlib1g-dev,

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: BamTools
 Source: https://github.com/pezmaster31/bamtools
 Files-Excluded: src/third_party
@@ -35,4 +35,3 @@ License: Expat
  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
  THE SOFTWARE.
-

debian/libbamtools2.4.0.install

+debian/tmp/usr/include/* usr/include/
+debian/tmp/usr/lib/* usr/lib/

debian/rules

 #!/usr/bin/make -f
 # -*- makefile -*-
 
-DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
+export DEB_BUILD_MAINT_OPTIONS=hardening=+bindnow
+
 %:
-	dh $@ --parallel
+	dh $@
 
 override_dh_auto_configure-indep:
 
 override_dh_auto_test-indep:
 
+override_dh_auto_test-arch:
+	cd obj-* && ln -s src/toolkit/ bin
+	dh_auto_test --arch
+
 override_dh_auto_build-indep:
 	doxygen -u docs/Doxyfile
 	doxygen docs/Doxyfile
@@ -23,26 +27,9 @@ override_dh_install-indep:
 	rm -f debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js
 	ln -s /usr/share/javascript/jquery/jquery.js debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js
 
-override_dh_install-arch:
-	d-shlibmove --commit \
-		    --multiarch \
-		    --devunversioned \
-		    --exclude-la \
-		    --movedev debian/tmp/usr/include/* usr/include \
-		    debian/tmp/usr/lib/lib*.so
-	dh_install --arch
-	# no need to install different versions of bamtools
-	rm -rf debian/$(DEBPKGNAME)/usr/bin/$(DEBPKGNAME)
-	mv debian/$(DEBPKGNAME)/usr/bin/$(DEBPKGNAME)-[0-9]* debian/$(DEBPKGNAME)/usr/bin/$(DEBPKGNAME)
-
 #override_dh_installman:
 #	LD_LIBRARY_PATH=debian/tmp/usr/lib:${LD_LIBRARY_PATH} help2man --name "a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files" --no-info --no-discard-stderr debian/tmp/usr/bin/bamtools > debian/bamtools.1
 
-SOURCEPKG=$(shell dpkg-parsechangelog | sed  -n 's/^Source: \(.*\)/\1/p')
-UPSTREAM=$(shell dpkg-parsechangelog |  sed -n 's/^Version: \(.*\)-[^-]*/\1/p')
-SHA1=$(lastword $(subst ~g, ,$(UPSTREAM)))
-ORIG=${SOURCEPKG}_${UPSTREAM}.orig.tar
-
 describe-current-version:
 	git describe --tags upstream | sed 's,^release-,,;s,-,+,;s,-,~,;'