debian/changelog

+bamtools (2.5.1+dfsg-3) UNRELEASED; urgency=medium
+
+  * Point Vcs fields to salsa.debian.org
+  * Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the
+    includes were formerly in lib package
+    Closes: #894886
+
+ -- Andreas Tille <tille@debian.org>  Thu, 05 Apr 2018 11:51:58 +0200
+
 bamtools (2.5.1+dfsg-2) unstable; urgency=medium
 
   * Move /usr/includes to -dev from libbamtools2.4.0

debian/control

@@ -14,8 +14,8 @@ Build-Depends: debhelper (>= 11),
                help2man,
                doxygen
 Standards-Version: 4.1.3
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/bamtools.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/bamtools.git
+Vcs-Browser: https://salsa.debian.org/med-team/bamtools
+Vcs-Git: https://salsa.debian.org/med-team/bamtools.git
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 
 Package: bamtools
@@ -57,6 +57,8 @@ Multi-Arch: same
 Section: libdevel
 Depends: libbamtools2.5.1 (= ${binary:Version}),
          ${misc:Depends}
+Breaks: libbamtools2.4.0 (<< 2.5.1+dfsg-2~)
+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~)
 Suggests: libbamtools-doc (= ${binary:Version})
 Description: C++ API for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM