debian/control

@@ -46,5 +46,5 @@ Description: short read aligner and other bioinformatic tools - JNI library
  PacBio, 454, and other reads; very high sensitivity and tolerant of
  errors and numerous large indels.
  .
- This package contains the architecture dependant library for the bbmap
+ This package contains the architecture dependent library for the bbmap
  tools.

debian/patches/debug_symbols.patch

+Author: Andreas Tille <tille@debian.org>
+Last-Update: Mon, 25 Mar 2019 09:54:19 +0100
+Description: Enable debug symbols
+
+--- a/jni/makefile.linux
++++ b/jni/makefile.linux
+@@ -1,7 +1,7 @@
+ CC=gcc
+ INCS=-I"$(JAVA_HOME)/include" -I"$(JAVA_HOME)/include/linux"
+-CFLAGS=-O3 -Wall -std=c99 -fPIC
+-LDFLAGS=-O3 -Wall -std=c99 -fPIC -shared
++CFLAGS+=-O3 -Wall -std=c99 -fPIC
++LDFLAGS+=-O3 -Wall -std=c99 -fPIC -shared
+ OBJ=BandedAlignerJNI.o MultiStateAligner11tsJNI.o BBMergeOverlapper.o
+ 
+ %.o: %.c

debian/patches/series

+debug_symbols.patch

debian/rules

@@ -40,7 +40,4 @@ override_dh_install:
 
 override_dh_fixperms:
 	dh_fixperms
-	chmod -x $(PKGBINDIR)/*
-
-override_dh_dwz:
-	echo "Dothing to prevent error: dwz -q -- debian/bbmap-jni/usr/lib/jni/libbbtoolsjni.so returned exit code 1"
+	chmod +x $(PKGBINDIR)/*