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Commits on Source (2)
......@@ -2,3 +2,6 @@ debian/missing-sources/compare_fasta.py usr/share/doc/bcalm/test
debian/missing-sources/reference.fasta usr/share/doc/bcalm/test
debian/missing-sources/simple_test.sh usr/share/doc/bcalm/test
example/* usr/share/doc/bcalm/test
test/* usr/share/doc/bcalm/test
debian/missing-sources/compare_fasta.py usr/share/doc/bcalm/test
#!/bin/bash
rm -f reference.fasta
#rm -f reference.fasta
#wget https://raw.githubusercontent.com/GATB/MindTheGap/f5cb0fec816686c7393772787d736565c4f056a4/test/full_test/reference.fasta >& /dev/null
../build/bcalm -in reference.fasta -abundance-min 1 > /dev/null >& /dev/null
rm -rf reference.unitigs.fa.glue*
rm -f compare_fasta.py
bcalm -in reference.fasta -abundance-min 1 > /dev/null >& /dev/null
#rm -rf reference.unitigs.fa.glue*
#rm -f compare_fasta.py
#wget https://raw.githubusercontent.com/GATB/minia/master/test/compare_fasta.py >& /dev/null
python3 compare_fasta.py reference.fasta reference.unitigs.fa
res=$?
rm -f reference.fasta reference.h5 reference.unitigs.fa compare_fasta.py
#rm -f reference.fasta reference.h5 reference.unitigs.fa compare_fasta.py
if [ "$res" = "0" ]
then
echo "test OK"
......
#!/bin/bash
set -e
pkg=#PACKAGENAME#
pkg=bcalm
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
# Double quote below to expand the temporary directory variable now versus
# later is on purpose.
# shellcheck disable=SC2064
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cp -a /usr/share/doc/${pkg}/test/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
#do_stuff_to_test_package#
bash simple_test.sh
bash run-tiny.sh