Commit 207e7cea authored by Steffen Möller's avatar Steffen Möller
Browse files

More dependencies

parent ca3194e5

debian/TODO

+13 −12
Original line number Diff line number Diff line
@@ -33,25 +33,25 @@ dependencies that only surfaced as a need because of some better testing 
convinced that this is no longer required.



  Unclear

        beautifulsoup4

        dnapi

        fadapa

        htslib	# not called directly?

        beautifulsoup4 https://www.crummy.com/software/BeautifulSoup/

        ipyparallel >=6.0.2

        ipython-cluster-helper >=0.6.1

        msgpack-python

        py

        pycrypto

        pytest-cov >=2.6.1

        pytest-mock

        #py # conda-specific

        python-dateutil >=2.5.0	# likely obsolete?

        pyyaml

        seaborn # not called directly?

        pyyaml https://pyyaml.org/wiki/PyYAML

        seqcluster # not yet in new

 To be packaged

	dnapi https://github.com/jnktsj/DNApi

        fadapa https://github.com/fadapa/fadapa

        pycrypto

 Available in Debian but not added as a dependency (yet)

        boto

        pip

        htslib	# not called directly?

        #pip # ridiculous

        openssl >=1.1.1c,<1.1.2a

        pytest-mock

        pytest-cov

        seaborn # not called directly?

        yamllint 

 Already a dependency

        pytest # an implicit python build dependency
@@ -65,6 +65,7 @@ convinced that this is no longer required. 
        joblib >=0.12

        logbook

        matplotlib

        msgpack-python https://msgpack.org/

        mock

        python

        pandas

debian/control

+2 −1
Original line number Diff line number Diff line
@@ -82,7 +82,8 @@ Recommends: 
         python3-tabulate

Suggests:

         bcbio-doc,

         python3-bioblend

         python3-bioblend,

         python3-msgpack

Description: library for analysing high-throughput sequencing data

 This package installs the Python 3 libraries of the bcbio-nextgen

 toolkit implementing best-practice pipelines for fully automated high