Commit 86669a52 authored by Steffen Möller's avatar Steffen Möller
Browse files

Update on pizzly packaging

parent 86cdb51c

debian/TODO

+15 −3
Original line number Diff line number Diff line
@@ -4,7 +4,15 @@ package bamtofastq from biobambam2 
package snpEff

  http://snpeff.sourceforge.net/

  https://salsa.debian.org/med-team/snpeff/blob/master/debian/changelog

      The packaging needs help with its dependencies.

  The packaging needs help with its dependencies:

     apfloat 1.6.3:

       https://github.com/mtommila/apfloat

       http://www.apfloat.org/apfloat_java/maven.html

     charts4j 1.3:

       https://mvnrepository.com/artifact/com.googlecode.charts4j/charts4j/1.3

     com.typesafe.akka:akka-actor 2.0.1

     distlib 0.9.1:

       https://sourceforge.net/projects/statdistlib/?source=navbar



package atropos

  https://salsa.debian.org/med-team/atropos (in new queue)
@@ -83,12 +91,16 @@ package seqcluster 


package pizzly

   https://github.com/pmelsted/pizzly

   including pizzly_flatten_json.py

     Steffen has a look

   https://salsa.debian.org/med-team/pizzly (fails in pbuilder - help requested)

    still needs to include pizzly_flatten_json.py



package vt

   https://github.com/atks/vt



package Rmath

   https://github.com/atks/Rmath

     needed by vt



package fgbio

  https://github.com/fulcrumgenomics/fgbio

  Anyone much into scala?