Commit 86cdb51c authored by Steffen Möller's avatar Steffen Möller
Browse files

Update of d/TODO, d/control

parent 22e2db16

debian/TODO

+20 −5
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@@ -29,8 +29,22 @@ package optitype 


package pyomo

  https://github.com/Pyomo/pyomo

  https://salsa.debian.org/python-team/applications/pyomo - builds locally (Steffen does not have upload privileges, some tests fail)

    needed by optitype



package pyutilib

  https://github.com/PyUtilib/pyutilib

  https://salsa.debian.org/python-team/modules/pyutilib - builds, tests fail

    needed by pyomo for testing



package gjh_asl_json

  https://github.com/ghackebeil/gjh_asl_json

    needed by pyomo for testing



package "asl solver"

  http://www.ampl.com/netlib/ampl/solvers.tgz

    needed by gjh_asl_json



package vcfanno

  https://salsa.debian.org/med-team/vcfanno

  Not fun because of many GO packages that are still missing,
@@ -70,6 +84,7 @@ https://github.com/lpantano/seqcluster/archive/1824d37.tar.gz 
package pizzly

   https://github.com/pmelsted/pizzly

   including pizzly_flatten_json.py

     Steffen has a look



package vt

   https://github.com/atks/vt

debian/control

+1 −0
Original line number Diff line number Diff line
@@ -90,6 +90,7 @@ Recommends: bcftools, 
            grabix,

            libvcflib-tools,

            macs,

            python3-geneimpacts,

            python3-h5py,

            pythonpy,

            rna-star,