Commit 8aef9327 authored by Steffen Möller's avatar Steffen Möller
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Update for seqcluster and ViennaRNA

parent b5831fd6
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+5 −1
Original line number Diff line number Diff line
@@ -69,8 +69,10 @@ package seqcluster

     seqcluster accepted a patch to eliminate a "Free as in beer" graph library from its source tree at ./misc/js/amcharts.js. These are now references to the online location in a CDN.

     The package builds with testing if RNAfold of the ViennaRNA package is present. Otherwise it stalls without an error message.

     Additional requirements:
      python3-dateutils (not yet packaged)
      python3-dateutils (in new queue)
      python3-pytz ----> packaged but under the name python3-tz

     And there are R packages that should be recommended at least (from https://github.com/lpantano/seqcluster/blob/master/scripts/install_libraries.R)
@@ -93,6 +95,8 @@ package viennarna
	Steffen revisits ViennaRNA, will update to new upstream version this weekend
           Does not compile
           External dependencies json (in Debian, I think, can otherwise be deconfigured) and cthreadpool (not yet in Debian) need to be addressed
           It now mostly compiles.
           Better use current master than release because of erroneous commits of autogenerated files in 2.4.13 release source tree.

package cthreadpool
   https://github.com/Pithikos/C-Thread-Pool/blob/master/thpool.h