Commit d8902ed2 authored by Steffen Möller's avatar Steffen Möller
Browse files

Updates to bcbio's TODO list

parent ea18afc5

debian/TODO

+8 −3
Original line number Diff line number Diff line
@@ -30,6 +30,7 @@ Now at https://github.com/AdamaJava/adamajava 


add hisat2_extract_splice_sites.py to the hisat2 package

  -> Done in Git in preparation for 2.1.0-3

  -> Added arch-indep python3-hisat2 package



Package MutliQC - in salsa

   https://salsa.debian.org/med-team/multiqc
@@ -37,8 +38,7 @@ Package MutliQC - in salsa 
package sailfish

   https://salsa.debian.org/med-team/sailfish



package kallisto

   -> in new queue

package kallisto (in new queue)



package r-wasabi

https://github.com/COMBINE-lab/wasabi
@@ -67,6 +67,11 @@ https://github.com/fulcrumgenomics/fgbio 


package manta

https://github.com/Illumina/manta/

  - Steffen works on this one



package strelka

https://github.com/Illumina/strelka/releases

  - Steffen works on this one



package lumpy

https://github.com/arq5x/lumpy-sv
@@ -76,7 +81,7 @@ http://research.cs.wisc.edu/wham/ 


# An easy one:

package tophat-recondition

https://github.com/cbrueffer/tophat-recondition

https://github.com/cbrueffer/tophat-recondition (in new queue)



package qualimap

  https://salsa.debian.org/med-team/qualimap