debian/TODO

@@ -12,6 +12,7 @@ package umis
 
 package mosdepth
   https://salsa.debian.org/med-team/mosdepth
+  several nim libraries would be needed
 
 package qsignature
 https://sourceforge.net/p/adamajava/wiki/Home/
@@ -20,16 +21,13 @@ http://sourceforge.net/projects/adamajava/files/qsignature.tar.bz2/download
 https://sourceforge.net/p/adamajava/code/HEAD/tree/trunk/adamajava/qsignature/
 
 package optitype
-https://github.com/FRED-2/OptiType
+  https://salsa.debian.org/med-team/optitype (rudimentary)
 
 package vcfanno
 https://github.com/brentp/vcfanno
 
 Now at https://github.com/AdamaJava/adamajava
 
-Package OptiTypePipeline
-  https://github.com/indraniel/OptiType ??
-
 add hisat2_extract_splice_sites.py to the hisat2 package
   -> Done in Git in preparation for 2.1.0-3