Commit ed1abfd5 authored by Dylan Aïssi's avatar Dylan Aïssi
Browse files

Replace ADTTMP with AUTOPKGTEST_TMP

parent 70db7119

debian/changelog

+1 −0
Original line number Diff line number Diff line 
beagle (5.1-191108+dfsg-1) UNRELEASED; urgency=medium



  * New upstream release.

  * Replace ADTTMP with AUTOPKGTEST_TMP.



 -- Dylan Aïssi <daissi@debian.org>  Wed, 20 Nov 2019 08:00:44 +0100

debian/tests/run-sample-analysis

+5 −6
Original line number Diff line number Diff line
@@ -2,14 +2,13 @@ 
# http://dep.debian.net/deps/dep8/

# Autopkgtest: Test if beagle run analysis correctly

# Author: Dylan Aïssi <daissi@debian.org>

# Last-Update: 2019-09-19



pkg=beagle

if [ "$ADTTMP" = "" ] ; then

  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`

if [ "$AUTOPKGTEST_TMP" = "" ] ; then

  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`

fi

cd $ADTTMP

cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP

cd $AUTOPKGTEST_TMP

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP



# Generate necessary files

gzip test.vcf
@@ -26,4 +25,4 @@ beagle ref=ref.vcf.gz gt=target.vcf.gz out=out.ref 
# Beagle with bref3 file

beagle ref=ref.bref3 gt=target.vcf.gz out=out.bref3



rm -f $ADTTMP/*
 
rm -f $AUTOPKGTEST_TMP/*