debian/changelog

+beagle (5.1-190824+dfsg-2) unstable; urgency=medium
+
+  * Fix autopkgtest tests.
+
+ -- Dylan Aïssi <daissi@debian.org>  Fri, 13 Sep 2019 21:18:50 +0200
+
 beagle (5.1-190824+dfsg-1) unstable; urgency=medium
 
   * New upstream release.

debian/tests/run-sample-analysis

@@ -14,6 +14,7 @@ cp -a /usr/share/doc/${pkg}/examples/* $ADTTMP
 BEAGLE_TEST='java -jar /usr/share/beagle/beagle.jar'
 
 # Generate necessary files
+gzip test.vcf
 zcat test.vcf.gz | cut -f1-190 | tr '/' '|' | gzip > ref.vcf.gz
 zcat test.vcf.gz | cut -f1-9,191-200 | gzip > target.vcf.gz
 java -jar /usr/share/beagle/bref3.jar ref.vcf.gz > ref.bref3