debian/changelog

 beast-mcmc (1.10.0+dfsg-1) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * New upstream version
   * Exclude Latex doc creation
   * New Build-Depends: libejml-java
   * New versioned Build-Depends: libhmsbeagle-java (>= 3.0.2)
 
+  [ Jelmer Vernooij ]
+  * Use secure copyright file specification URI.
+  * Trim trailing whitespace.
+
  -- Andreas Tille <tille@debian.org>  Thu, 21 Jun 2018 17:50:40 +0200
 
 beast-mcmc (1.8.4+dfsg.1-3) unstable; urgency=medium

debian/control

@@ -41,14 +41,14 @@ Depends: ${shlibs:Depends},
          libnetlib-java
 Suggests: beast-mcmc-doc
 Description: Bayesian MCMC phylogenetic inference
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured 
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
  phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a 
- framework for testing evolutionary hypotheses without conditioning on a 
- single tree topology. BEAST uses MCMC to average over tree space, so that 
- each tree is weighted proportional to its posterior probability. Included 
- is a simple to use user-interface program for setting up standard 
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
  analyses and a suit of programs for analysing the results.
 
 Package: libnucleotidelikelihoodcore0
@@ -60,14 +60,14 @@ Conflicts: beast-mcmc-lib
 Provides: beast-mcmc-lib
 Replaces: beast-mcmc-lib
 Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured 
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
  phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a 
- framework for testing evolutionary hypotheses without conditioning on a 
- single tree topology. BEAST uses MCMC to average over tree space, so that 
- each tree is weighted proportional to its posterior probability. Included 
- is a simple to use user-interface program for setting up standard 
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
  analyses and a suit of programs for analysing the results.
  .
  This package provides an implementation of LikelihoodCore for nucleotides
@@ -80,14 +80,14 @@ Depends: ${shlibs:Depends},
          ${misc:Depends}
 Enhances: beast-mcmc
 Description: Bayesian MCMC phylogenetic inference - example data
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured 
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
  phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a 
- framework for testing evolutionary hypotheses without conditioning on a 
- single tree topology. BEAST uses MCMC to average over tree space, so that 
- each tree is weighted proportional to its posterior probability. Included 
- is a simple to use user-interface program for setting up standard 
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
  analyses and a suit of programs for analysing the results.
  .
  This package contains the example data.
@@ -99,14 +99,14 @@ Depends: ${shlibs:Depends},
          ${misc:Depends}
 Enhances: beast-mcmc
 Description: Bayesian MCMC phylogenetic inference - documentation
- BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
- sequences. It is entirely orientated towards rooted, time-measured 
+ BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
+ sequences. It is entirely orientated towards rooted, time-measured
  phylogenies inferred using strict or relaxed molecular clock models. It
- can be used as a method of reconstructing phylogenies but is also a 
- framework for testing evolutionary hypotheses without conditioning on a 
- single tree topology. BEAST uses MCMC to average over tree space, so that 
- each tree is weighted proportional to its posterior probability. Included 
- is a simple to use user-interface program for setting up standard 
+ can be used as a method of reconstructing phylogenies but is also a
+ framework for testing evolutionary hypotheses without conditioning on a
+ single tree topology. BEAST uses MCMC to average over tree space, so that
+ each tree is weighted proportional to its posterior probability. Included
+ is a simple to use user-interface program for setting up standard
  analyses and a suit of programs for analysing the results.
  .
  This package contains the documentation.

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: BEAST-MCMC
 Upstream-Contact: Alexei Drummond <alexei@cs.auckland.ac.nz>,
                   Andrew Rambaut <a.rambaut@ed.ac.uk>