debian/changelog

 beast-mcmc (1.8.4+dfsg.1-3) UNRELEASED; urgency=medium
 
+  [ Steffen Moeller ]
   * d/control: Standards-Version: 4.1.3 (no changes needed)
   * d/u/metadata:
     - added RRIDs
     - added \n to end of file
 
+  [ Andreas Tille ]
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.1.4
+  * debhelper 11
+
+  [ Adrian Bunk ]
+  * Fix encoding issues that caused FTBFS with TeX Live 2018
+    Closes: #896483
+
  -- Steffen Moeller <moeller@debian.org>  Thu, 29 Mar 2018 20:21:26 +0200
 
 beast-mcmc (1.8.4+dfsg.1-2) unstable; urgency=medium

debian/compat

-10
+11

debian/control

@@ -4,7 +4,7 @@ Uploaders: Andreas Tille <tille@debian.org>,
            Olivier Sallou <osallou@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                javahelper,
                ant,
                ant-optional,
@@ -24,9 +24,9 @@ Build-Depends: debhelper (>= 10),
                libitext1-java,
                texlive-latex-base,
                texlive-latex-extra
-Standards-Version: 4.1.3
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/beast-mcmc.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/beast-mcmc.git
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/beast-mcmc
+Vcs-Git: https://salsa.debian.org/med-team/beast-mcmc.git
 Homepage: http://beast.bio.ed.ac.uk/
 
 Package: beast-mcmc

debian/patches/series

@@ -4,3 +4,4 @@ patch_tex_docs.patch
 fix_classpath_in_build_tracer_xml.patch
 create_soname.patch
 fix_encoding.patch
+tex_encoding.patch

debian/patches/tex_encoding.patch

+Description: Fix encoding issues that caused FTBFS with TeX Live 2018
+Author: Adrian Bunk <bunk@debian.org>
+Bug-Debian: https://bugs.debian.org/896483
+
+--- beast-mcmc-1.8.4+dfsg.1.orig/doc/BEAST14_Manual.tex
++++ beast-mcmc-1.8.4+dfsg.1/doc/BEAST14_Manual.tex
+@@ -1,6 +1,7 @@
+ %% LyX 1.4.3 created this file.  For more info, see http://www.lyx.org/.
+ %% Do not edit unless you really know what you are doing.
+ \documentclass[a4paper, english]{article}
++ \usepackage[latin1]{inputenc}
+  \usepackage{graphicx}
+  \usepackage{amssymb}
+  \usepackage{epstopdf}
+--- beast-mcmc-1.8.4+dfsg.1.orig/doc/tutorial/Virus_Practical_1_6_1/Practical_BEAST.tex
++++ beast-mcmc-1.8.4+dfsg.1/doc/tutorial/Virus_Practical_1_6_1/Practical_BEAST.tex
+@@ -1,4 +1,6 @@
+ \documentclass[12pt]{article}
++\usepackage[latin1]{inputenc}
++\usepackage[T1]{fontenc}
+ \usepackage{graphicx}
+ \usepackage[left=3cm,top=3cm,right=3cm,bottom=3cm]{geometry}
+