Initial packaging

Notes on how this package can be tested.

────────────────────────────────────────

This package can be tested by running the provided test:

    sh run-unit-test

in order to confirm its integrity.

biobambam2 (2.0.95-1) UNRELEASED; urgency=medium

  * Initial release (Closes: #<bug>)

    TODO: https://salsa.debian.org/med-team/libmaus2

 -- Andreas Tille <tille@debian.org>  Fri, 12 Apr 2019 10:26:19 +0200

12

Source: biobambam2

Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Uploaders: Andreas Tille <tille@debian.org>

Section: science

Priority: optional

Build-Depends: debhelper (>= 12~),

               pkg-config

Standards-Version: 4.3.0

Vcs-Browser: https://salsa.debian.org/med-team/biobambam2

Vcs-Git: https://salsa.debian.org/med-team/biobambam2.git

Homepage: https://gitlab.com/german.tischler/biobambam2

Package: biobambam2

Architecture: any

Depends: ${shlibs:Depends},

         ${misc:Depends}

Description: tools for early stage alignment file processing

 This package contains some tools for processing BAM files including

 .

   bamsormadup:  parallel sorting and duplicate marking

   bamcollate2:  reads BAM and writes BAM reordered such that alignment

                 or collated by query name

   bammarkduplicates: reads BAM and writes BAM with duplicate alignments

                 marked using the BAM flags field

   bammaskflags: reads BAM and writes BAM while masking (removing) bits

                 from the flags column

   bamrecompress: reads BAM and writes BAM with a defined compression

                  setting. This tool is capable of multi-threading.

   bamsort:       reads BAM and writes BAM resorted by coordinates or

                  query name

   bamtofastq:    reads BAM and writes FastQ; output can be collated

                  or uncollated by query name

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

Upstream-Name: biobambam2

Source: https://gitlab.com/german.tischler/biobambam2/tags

Files: *

Copyright: 20xx-20yy <upstream>

License: <license>

Files: debian/*

Copyright: 2019 Andreas Tille <tille@debian.org>

License: <license>