debian/README.test

-Notes on how this package can be tested.
-────────────────────────────────────────
-
-This package can be tested by running the provided test:
-
-    sh run-unit-test
-
-in order to confirm its integrity.

debian/changelog

-biobambam2 (2.0.95-1) UNRELEASED; urgency=medium
+biobambam2 (2.0.95-1) unstable; urgency=medium
 
-  * Initial release (Closes: #<bug>)
-    TODO: https://salsa.debian.org/med-team/libmaus2
+  * Initial release (Closes: #926978)
 
- -- Andreas Tille <tille@debian.org>  Fri, 12 Apr 2019 10:26:19 +0200
+ -- Andreas Tille <tille@debian.org>  Sat, 13 Apr 2019 07:15:32 +0200

debian/copyright

@@ -3,9 +3,60 @@ Upstream-Name: biobambam2
 Source: https://gitlab.com/german.tischler/biobambam2/tags
 
 Files: *
-Copyright: 20xx-20yy <upstream>
-License: <license>
+Copyright: 2013-2019 German Tischler <tischler@mpi-cbg.de>
+           2011-2016 Genome Research Limited
+License: GPL-3+
+
+Files: src/biobambam2/ClipAdapters*
+Copyright: 2008, 2009, 2013-2014 Heng Li <lh3@sanger.ac.uk>, Genome Research Ltd
+           2010, 2012, 2013 Heng Li <lh3@sanger.ac.uk>, Broad Institute
+           2013 German Tischler
+           2013, 2015 Genome Research Limited
+License: MIT+GPL-3+
+ On Debian systems you can find the full text of the GNU General Public
+ License version 3 at /usr/share/common-licenses/GPL-3.
+ .
+ Cigar type code taken from htslib/sam.h copyright by Heng Li under the
+ MIT/Expat License as follows:
+ .
+    Permission is hereby granted, free of charge, to any person obtaining a copy
+    of this software and associated documentation files (the "Software"), to deal
+    in the Software without restriction, including without limitation the rights
+    to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+    copies of the Software, and to permit persons to whom the Software is
+    furnished to do so, subject to the following conditions:
+ .
+    The above copyright notice and this permission notice shall be included in
+    all copies or substantial portions of the Software.
+ .
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+    THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+    FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+    DEALINGS IN THE SOFTWARE
+
+Files: src/programs/bamseqchksum*
+Copyright: 2014-2014 David K. Jackson
+           2009-2016 German Tischler
+           2011-2014 Genome Research Limited
+License: GPL-3+
 
 Files: debian/*
 Copyright: 2019 Andreas Tille <tille@debian.org>
-License: <license>
+License: GPL-3+
+
+License: GPL-3+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+ .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+ .
+ On Debian systems you can find the full text of the GNU General Public
+ License version 3 at /usr/share/common-licenses/GPL-3.

debian/tests/control

-Tests: run-unit-test
-Depends: @
-Restrictions: allow-stderr

debian/tests/run-unit-test

-#!/bin/bash
-set -e
-
-pkg=#PACKAGENAME#
-
-if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
-  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  # Double quote below to expand the temporary directory variable now versus
-  # later is on purpose.
-  # shellcheck disable=SC2064
-  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
-fi
-
-cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
-
-cd "${AUTOPKGTEST_TMP}"
-
-#do_stuff_to_test_package#