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bioperl-run (1.7.3-1) UNRELEASED; urgency=medium

  * New upstream version
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  * debhelper 12
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 -- Andreas Tille <tille@debian.org>  Mon, 11 Feb 2019 18:04:51 +0100

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bioperl-run (1.7.2-4) unstable; urgency=medium
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  * (Build-)Depends: ncoils
  * do not run tests parallel to get sensibly sorted output
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  * Allow MPI oversubscription (as in phyml build since phyml caused
    problems inside build time tests)
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    This is also not reliable - skip phyml test at all
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    Closes: #906337
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  * debhelper 11
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  * Point Vcs fields to salsa.debian.org
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  * Standards-Version: 4.2.1
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  * Fix Homepage
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  * Lintian-override for script-with-language-extension
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 -- Andreas Tille <tille@debian.org>  Fri, 14 Sep 2018 20:10:08 +0200
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bioperl-run (1.7.2-3) unstable; urgency=medium

  * Drop adjust_bowtie_tests.patch, Closes: #887578
  * Bump Standards-Version to 4.1.3 (no changes needed)

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 26 Jan 2018 10:43:45 +0100

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bioperl-run (1.7.2-2) unstable; urgency=medium
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  * Team upload
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  * Add adjust_bowtie_tests.patch fixing failing tests for Bowtie
    Closes: #880347
  * Bump Standards-Version to 4.1.2, apply cme fix dpkg

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 07 Dec 2017 18:19:04 +0100

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bioperl-run (1.7.2-1) unstable; urgency=medium
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  * New upstream version
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  * Convert packaging from SVN to Git
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  * For some reason Ensembl.t test is executed in autopkgtest run even
    if it should be skipped due to missing preconditions
    (http://search.cpan.org/~cjfields/Bio-EUtilities-1.72/lib/Bio/DB/EUtilities.pm)
    The test will now be fully removed to make sure it is skipped.
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  * Standards-Version: 4.1.0 (no changes needed)
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  * Do not try to run bowtie tests with wrong bowtie call
    Closes: #868073
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 -- Andreas Tille <tille@debian.org>  Wed, 20 Sep 2017 14:29:45 +0200
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bioperl-run (1.7.1-3) unstable; urgency=medium

  * s/Conflicts/Breaks/
    Closes: #850029

 -- Andreas Tille <tille@debian.org>  Fri, 13 Jan 2017 08:25:26 +0100

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bioperl-run (1.7.1-2) unstable; urgency=medium

  * Conflicts: libbio-perl-perl (<< 1.7.1-1)
    Closes: #850029

 -- Andreas Tille <tille@debian.org>  Tue, 03 Jan 2017 21:10:54 +0100

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bioperl-run (1.7.1-1) unstable; urgency=medium
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  * New upstream version
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  * Testsuite: autopkgtest-pkg-perl
  * cme fix dpkg-control
  * Enable lots of tests
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  * Module Bio::Tools::Run::WrapperBase was taken over from BioPerl into
    bioperl-run in commit acd57a7d14112c5fd2cd979005b072efdaf57679 which is
    taken over in quilt patch
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  * Fix homepage
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  * d/watch:
     - version=4
     - Fix versionmangling
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  * Build-Depends: raxml
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  * Update copyright
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  * debhelper 10
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 -- Andreas Tille <tille@debian.org>  Wed, 21 Dec 2016 21:24:05 +0100
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bioperl-run (1.6.9-3) unstable; urgency=medium
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  [ Charles Plessy ]
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  * Build-depend on libmodule-build-perl, Closes: #788888.

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  [ Andreas Tille ]
  * Compliant with Standards-Version: 3.9.6

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 -- Charles Plessy <plessy@debian.org>  Tue, 23 Jun 2015 20:05:10 +0900

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bioperl-run (1.6.9-2) unstable; urgency=low

  * debian/source/format: 3.0 (quilt)
  * debian/control:
     - cme fix dpkg-control
     - canonical Vcs URLs
     - debhelper 9
  * debian/README.source: removed because redundant
  * debian/copyright: DEP5
  * debian/watch: Point download location to github which provides more
    reliable version numbering than CPAN which would have needed a more
    complex version mangling
  * refreshed quilt patches to get rid of fuzz

 -- Andreas Tille <tille@debian.org>  Fri, 15 Nov 2013 10:03:29 +0100

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bioperl-run (1.6.9-1) unstable; urgency=low
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  * New upstream release. 
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  * Converted and validated debian/copyright to latest machine-readable format.
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  * debian/control:
    - Refreshed the list of packages for which wrappers are provided, in the
      Suggests field as well as in an experimental Build-Recommends field.
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    - Incremented Standards-Version to reflect conformance with Policy 3.9.2.
      No other changes needed.
    - Vcs-Browser URL made redirectable to viewvc.
    - Removed useless ‘svn’ in the Vcs-Svn URL.
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  * Point debian/watch to CPAN.
  * Tiny style with Debhelper 8 (debian/rules, debian/compat, debian/control).
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  * Split scripts in bioperl-run and modules in libbio-perl-run-perl.
    (debian/rules, debian/control, debian/bioperl-run.install,
    debian/libbio-perl-run-perl.install)
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  * debian/rules, debian/patches/series, debian/control:
    - debian/patches/install-scripts.patch for non-interactive script install.
    - debian/patches/Use-system-s-Perl.patch against /usr/local/bin/perl.
    - debian/patches/Some-spellchecking.patch.
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  * Trigger network tests with DEB_MAINTAINER_MODE (debian/rules,
    debian/README.test).
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 -- Charles Plessy <plessy@debian.org>  Sat, 18 Jun 2011 13:21:36 +0900
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bioperl-run (1.6.1-1) unstable; urgency=low
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  * New upstream release.
  * debian/patches/10-wrong-path-for-interpreter.patch: removed
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    (fixed upstream).
  * debian/watch updated (bioperl -> BioPerl).
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  * debian/rules refreshed with dh-make-perl 0.53.
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    - Disabled installation of examples (removed upstream).
    - Removed the correction of file permission of Pise documentation
      (removed upstream).
    - Removed patching facilities (no patches anymore).
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    - Disabled tests as I experience failures with t/Eponine.t despite
      this program is not installed.
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  * debian/copyright:
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    - Removed vanity lines about debianization and debian copyright.
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    - Incremented years to 2009.
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    - Updated to latest experimentation of the machine-readable license summary.
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  * debian/control:
    - Incremented Standards-Version to reflect conformance on new Policy
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      (dropped versionned build-dependancy on Perl).
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    - Removed build-dependancy on quilt (no patches anymore).
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    - Depend and Build-Depend on bioperl versions superior or equal to 1.6.0.
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    - Build-depends on, and Recommdnes libalgorithm-diff-perl, libipc-run-perl,
      libio-string-perl and libxml-twig-perl, that are listed in DEPENDANCIES.
    - Build-depends on libarray-compare-perl and libtree-dagnode-perl
      (otherwise tests fail). 
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    - Depend on amap-align instead of amap (Closes: #541274).
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 -- Charles Plessy <plessy@debian.org>  Thu, 03 Sep 2009 11:00:03 +0900
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bioperl-run (1.5.2.100-1) unstable; urgency=low
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  * Initial Release (Closes: #505112).
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 -- Charles Plessy <plessy@debian.org>  Mon, 10 Nov 2008 09:11:17 +0900