Commit 1c2b9c0f authored by Charles Plessy's avatar Charles Plessy

Oops, gmap was non-free.

parent e7cd7584
......@@ -13,7 +13,7 @@ Build-Depends-Indep: perl, bioperl (>= 1.6.9),
libarray-compare-perl, libtree-dagnode-perl,
# Needed for the regression tests: all Recommends of bioperl-run except embassy, that needs interactive setup.
amap-align, bedtools, blast2, bowtie, bwa, clustalw, emboss, exonerate,
gmap, hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
samtools, sim4, t-coffee, tigr-glimmer, wise,
# Needed for the network tests:
libwww-perl
......@@ -29,11 +29,11 @@ Package: bioperl-run
Architecture: all
Depends: ${misc:Depends}, ${perl:Depends}, bioperl (>= 1.6.0), libbio-perl-run-perl (= ${source:Version})
Recommends: amap-align, bedtools, blast2, bowtie, bwa, clustalw, emboss, exonerate,
gmap, hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
samtools, sim4, t-coffee, tigr-glimmer, wise
Suggests:
# Non-Free.
paml, molphy, phylip,
gmap, paml, molphy, phylip,
# Not available.
# blat, cap3, coils, condense, drawgram, drawtree, eponine, fasta, footprinter, genemark-hmm,
# genewise, genscan, gerp, glimmer2, hyphy, lagan, lvb, match, mcs, mdust, meme, minimo,
......
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