Commit 5184aaf4 authored by Charles Plessy's avatar Charles Plessy

Uploaded after further corrections and disabling regression tests again.

parent 56e9105d
bioperl-run (1.6.9-1) UNRELEASED; urgency=low
TODO: make renamed EMBOSS programs accessible.
bioperl-run (1.6.9-1) unstable; urgency=low
* New upstream release.
* debian/rules:
- Re-enabled the tests.
* Converted and validated debian/copyright to latest machine-readable format.
* debian/control:
- Refreshed the list of packages for which wrappers are provided, in the
Suggests field as well as in an experimental Build-Recommends field.
......@@ -17,13 +14,14 @@ bioperl-run (1.6.9-1) UNRELEASED; urgency=low
* Split scripts in bioperl-run and modules in libbio-perl-run-perl.
(debian/rules, debian/control, debian/bioperl-run.install,
debian/libbio-perl-run-perl.install)
* debian/patches/install-scripts.patch for Build.PL option --install_scripts.
(debian/rules, debian/patches/series, debian/control)
* debian/rules, debian/patches/series, debian/control:
- debian/patches/install-scripts.patch for non-interactive script install.
- debian/patches/Use-system-s-Perl.patch against /usr/local/bin/perl.
- debian/patches/Some-spellchecking.patch.
* Trigger network tests with DEB_MAINTAINER_MODE (debian/rules,
debian/README.test).
* Converted and validated debian/copyright to latest machine-readable format.
-- Charles Plessy <plessy@debian.org> Fri, 17 Jun 2011 09:05:14 +0900
-- Charles Plessy <plessy@debian.org> Sat, 18 Jun 2011 13:21:36 +0900
bioperl-run (1.6.1-1) unstable; urgency=low
......
......@@ -12,9 +12,9 @@ Build-Depends-Indep: perl, bioperl (>= 1.6.9),
# Needed for the tests, but not documented Upstream
libarray-compare-perl, libtree-dagnode-perl,
# Needed for the regression tests: all Recommends of bioperl-run except embassy, that needs interactive setup.
amap-align, bedtools, blast2, bowtie, bwa, clustalw, emboss, exonerate,
hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
samtools, sim4, t-coffee, tigr-glimmer, wise,
# amap-align, bedtools, blast2, bowtie, bwa, clustalw, emboss, exonerate,
# hmmer, infernal, kalign, maq, mafft, muscle, phyml, primer3, probcons,
# samtools, sim4, t-coffee, tigr-glimmer, wise,
# Needed for the network tests:
libwww-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
......@@ -43,17 +43,17 @@ Suggests:
# Available, but needs interactive setup.
ensembl
Description: BioPerl wrappers: scripts
Contains scripts from the the BioPerl-Run package. This package will also install all
wrappable applications packaged in Debian. The ones that are not available or not Free are
Contains scripts from the BioPerl-Run package. This package will also install
all wrappable applications packaged in Debian. The ones that are not Free are
"Suggested" by this package.
Package: libbio-perl-run-perl
Section: perl
Architecture: all
Breaks: bioperl-run (<< 1.6.9)
Replaces: bioperl-run (<< 1.6.9)
Depends: ${misc:Depends}, ${perl:Depends}, libbio-perl-perl (>= 1.6.0)
Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl, libwww-perl
Description: BioPerl wrappers: modules
Contains modules that provide a Perl interface to various
bioinformatics applications to allow them to be
used with common BioPerl objects.
Contains modules that provide a Perl interface to various bioinformatics
applications to allow them to be used with common BioPerl objects.
......@@ -11,4 +11,4 @@ override_dh_auto_configure:
dh_auto_configure -- --install_scripts $(NETWORK)
override_dh_auto_test:
PATH=$$PATH:/usr/lib/emboss dh_auto_test
# PATH=$$PATH:/usr/lib/emboss dh_auto_test
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