Commit 7a498ac1 authored by Charles Plessy's avatar Charles Plessy

Corrected build depndancies, and simplified debian/rules.

parent b63bf1ff
bioperl-run (1.6.1-1) UNRELEASED; urgency=low
TODO: it downloads CPAN stuff when built by cowbuilder. This is wrong.
TODO: Eponine test fails.
* New upstream release.
* debian/patches/10-wrong-path-for-interpreter.patch: removed
(fixed upstream).
* debian/watch updated (bioperl -> BioPerl).
* debian/rules:
* debian/rules refreshed with dh-make-perl 0.53.
- Disabled installation of examples (removed upstream).
- Removed the correction of file permission of Pise documentation
(removed upstream).
- Replaced `dh_clean -k` by dephelper 7's `dh_prep`.
- Removed patching facilities (no patches anymore).
* debian/copyright:
- Removed vanity lines about debianization.
......@@ -21,8 +20,12 @@ TODO: it downloads CPAN stuff when built by cowbuilder. This is wrong.
(no changes needed).
- Removed build-dependancy on quilt (no patches anymore).
- Depend and Build-Depend on bioperl versions superior or equal to 1.6.0.
- Build-depends on, and Recommdnes libalgorithm-diff-perl, libipc-run-perl,
libio-string-perl and libxml-twig-perl, that are listed in DEPENDANCIES.
- Build-depends on libarray-compare-perl and libtree-dagnode-perl
(otherwise tests fail).
-- Charles Plessy <> Tue, 31 Mar 2009 20:29:19 +0900
-- Charles Plessy <> Sat, 11 Apr 2009 12:59:00 +0900
bioperl-run ( unstable; urgency=low
......@@ -2,7 +2,8 @@ Source: bioperl-run
Section: science
Priority: optional
Build-Depends: debhelper (>= 7), libmodule-build-perl
Build-Depends-Indep: perl (>= 5.6.1), bioperl (>= 1.6.0)
Build-Depends-Indep: perl (>= 5.6.1), bioperl (>= 1.6.0), libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl,
libarray-compare-perl, libtree-dagnode-perl
Maintainer: Debian Med Packaging Team <>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <>
......@@ -14,6 +15,7 @@ Homepage:
Package: bioperl-run
Architecture: all
Depends: perl (>= 5.6.1), ${misc:Depends}, bioperl (>= 1.6.0)
Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl
Suggests: emboss, hmmer, wise, molphy, phylip, clustalw, sim4, t-coffee, blast2, exonerate, amap
Description: Wrapper modules for BioPerl
Contains modules that provide a Perl interface to various
#!/usr/bin/make -f
# This debian/rules file is provided as a template for normal perl
# packages. It was created by Marc Brockschmidt <> for
# the Debian Perl Group ( but may
# be used freely wherever it is useful.
# It was later modified by Jason Kohles <>
# to support Module::Build installed modules
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
# If set to a true value then MakeMaker's prompt function will
# always return the default without waiting for user input.
PERL ?= /usr/bin/perl
PACKAGE = $(shell dh_listpackages)
TMP = $(CURDIR)/debian/$(PACKAGE)
build: build-stamp
# Add commands to compile the package here
$(PERL) Build.PL installdirs=vendor
$(PERL) Build
# disabled tests because they depend on too much external programs
# $(PERL) Build test
dh build
touch $@
dh_clean build-stamp install-stamp
# Add commands to clean up after the build process here
[ ! -f Build ] || $(PERL) Build --allow_mb_mismatch 1 distclean
dh $@
install: install-stamp
install-stamp: build-stamp
# Add commands to install the package into $(TMP) here
$(PERL) Build install destdir=$(TMP) create_packlist=0
# prename is the rename utility written in perl usually available as /usr/bin/rename in Debian.
prename s/.pl$$// debian/bioperl-run/usr/bin/*pl
prename s/.pl.1p$$/.1p/ debian/bioperl-run/usr/share/man/man1/*1p
dh install
touch $@
# We have nothing to do here for an architecture-independent package
binary-indep: build install
# dh_installexamples examples/*
dh_installchangelogs Changes
binary-indep: install
dh $@
binary: binary-arch binary-indep
binary: binary-indep binary-arch
.PHONY: build clean binary-indep binary-arch binary install
.PHONY: binary binary-arch binary-indep install clean build
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