Commit a5fe94d9 authored by Charles Plessy's avatar Charles Plessy

New upstream release in preparation.

parent ef93d6d1
bioperl-run (1.6.1+rc1-1) UNRELEASED; urgency=low
TODO: make renamed EMBOSS programs accessible.
* New upstream release in preparation.
* debian/rules:
- Re-enabled the tests.
* debian/control:
- Refreshed the list of packages for which wrappers are provided, in the
Suggests field as well as in an experimental Build-Recommends field.
-- Charles Plessy <plessy@debian.org> Fri, 02 Oct 2009 13:34:41 +0900
bioperl-run (1.6.1-1) unstable; urgency=low
* New upstream release.
......
......@@ -4,6 +4,13 @@ Priority: optional
Build-Depends: debhelper (>= 7.0.50), libmodule-build-perl
Build-Depends-Indep: perl, bioperl (>= 1.6.0), libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl,
libarray-compare-perl, libtree-dagnode-perl
# Here is a list of all the packages and prospective packages for which wrappers are provided.
XS-Build-Recommends: coils, emboss, eponine, footprinter, wise, genscan, hmmer,
pise, ensembl, fingerprintscan, prscan, repeatmasker, seg, signalp, tmhmm,
tribe, paml, molphy, phylip, clustalw, sim4, t-coffee, blast2, fasta, lagan,
vista-align, amap-align, blat,
# This Perl library is needed for the network tests.
libwww-perl
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
......@@ -15,8 +22,11 @@ Homepage: http://www.bioperl.org/wiki/Run_package
Package: bioperl-run
Architecture: all
Depends: ${misc:Depends}, bioperl (>= 1.6.0)
Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl
Suggests: amap-align, emboss, hmmer, wise, molphy, phylip, clustalw, sim4, t-coffee, blast2, exonerate
Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl, libwww-perl
Suggests: coils, emboss, eponine, footprinter, wise, genscan, hmmer, pise,
ensembl, fingerprintscan, prscan, repeatmasker, seg, signalp, tmhmm, tribe,
paml, molphy, phylip, clustalw, sim4, t-coffee, blast2, fasta, lagan,
vista-align, amap-align, blat
Description: Wrapper modules for BioPerl
Contains modules that provide a Perl interface to various
bioinformatics applications to allow them to be
......
......@@ -5,8 +5,8 @@ build-stamp:
dh build
touch $@
# Test suite is failing on buildds because it does not detect correctly the absence of the Eponine program.
override_dh_auto_test:
PATH=$$PATH:/usr/lib/emboss dh_auto_test
clean:
dh $@
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment