debian/changelog

+bioperl (1.7.2-3) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/copyright
+  * Remove trailing whitespace in debian/rules
+  * Fix Perl interpreter path
+  * Fix URL for source download
+
+ -- Andreas Tille <tille@debian.org>  Sun, 28 Oct 2018 00:46:56 +0200
+
 bioperl (1.7.2-2) unstable; urgency=medium
 
   * Team upload

debian/compat

-10
+11

debian/control

@@ -7,9 +7,9 @@ Uploaders: Charles Plessy <plessy@debian.org>,
 Section: science
 Testsuite: autopkgtest-pkg-perl
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
 # Unnecessary according to lintian, but building with sbuild shows the contrary.
-               libmodule-build-perl (>= 0.420000) | perl (<< 5.19.0),
+               libmodule-build-perl (>= 0.420000) | perl (<< 5.19.0)
 Build-Depends-Indep: perl,
                      rename,
                      libio-string-perl,
@@ -55,9 +55,9 @@ Build-Depends-Indep: perl,
                      libwww-perl,
 # Needed to avoid downloading DTDs during the tests and therefore fail when network is not available:
                      libxml-sax-expatxs-perl
-Standards-Version: 4.1.2
-Vcs-Browser: https://anonscm.debian.org/git/debian-med/bioperl.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/bioperl.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/bioperl
+Vcs-Git: https://salsa.debian.org/med-team/bioperl.git
 Homepage: http://www.bioperl.org/
 
 Package: bioperl

debian/copyright

 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Source: http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.923.tar.gz
+Source: https://metacpan.org/release/BioPerl
 
 Files: *
 Copyright: The Bioperl developers.

debian/rules

@@ -26,3 +26,6 @@ override_dh_installchangelogs:
 
 override_dh_installexamples:
 	dh_installexamples examples/*
+	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done