debian/changelog

+biosquid (1.9g+cvs20050121-11) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.0
+  * Fix LDADD in Makefile.am
+    Closes: #906454
+  * d/rules:
+     - Drop --no-parallel
+     - Do not parse d/changelog
+
+ -- Andreas Tille <tille@debian.org>  Sat, 18 Aug 2018 08:06:54 +0200
+
 biosquid (1.9g+cvs20050121-10) unstable; urgency=medium
 
   * Upload to unstable

debian/compat

-10
+11

debian/control

@@ -3,13 +3,12 @@ Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                d-shlibs,
-               autotools-dev,
                pvm-dev
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/biosquid.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/biosquid.git
+Standards-Version: 4.2.0
+Vcs-Browser: https://salsa.debian.org/med-team/biosquid
+Vcs-Git: https://salsa.debian.org/med-team/biosquid.git
 Homepage: http://eddylab.org/software.html
 
 Package: biosquid
@@ -52,8 +51,8 @@ Depends: ${shlibs:Depends},
          libsquid1 (= ${binary:Version}),
          ${misc:Depends}
 Breaks: biosquid-dev
-Replaces: biosquid-dev
 Provides: biosquid-dev
+Replaces: biosquid-dev
 Description: biosquid headers and static library for biological sequence analysis
  SQUID is a library of C code functions for sequence analysis. It also
  includes a number of small utility programs to convert, show statistics,

debian/patches/pkg-config.patch

@@ -35,13 +35,15 @@ Last-Update: Thu, 23 Mar 2017 21:55:15 +0100
  
 --- a/Makefile.am
 +++ b/Makefile.am
-@@ -74,6 +74,9 @@ bin_PROGRAMS =	afetch\
- 
- LDADD = -lsquid -lm
+@@ -72,7 +72,10 @@ bin_PROGRAMS =	afetch\
+ 	translate\
+ 	weight
  
+-LDADD = -lsquid -lm
++LDADD = libsquid.la -lm
++
 +pkgconfigdir=$(libdir)/pkgconfig
 +pkgconfig_DATA = libsquid.pc
-+
+ 
  bin_MANS =  afetch\
  	alistat\
- 	compstruct\

debian/rules

 #!/usr/bin/make -f
 
-
 export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 # Uncomment this to turn on verbose mode.
 export DH_VERBOSE=1
 
-DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+include /usr/share/dpkg/default.mk
 LIBNAME	       := libsquid
 
 %:
-	dh $@ --no-parallel
+	dh $@
 
 override_dh_auto_clean:
 	dh_auto_clean
@@ -42,12 +41,12 @@ override_dh_install:
 		    --exclude-la \
 		    --override s/libpvm3-3-dev/pvm-dev/ \
 		    --movedev debian/tmp/usr/include/* usr/include \
-		    --movedev squid.h usr/include/$(DEBPKGNAME) \
-		    --movedev squidconf.h usr/include/$(DEBPKGNAME) \
+		    --movedev squid.h usr/include/$(DEB_SOURCE) \
+		    --movedev squidconf.h usr/include/$(DEB_SOURCE) \
 		    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
 		    debian/tmp/usr/lib/*/$(LIBNAME).so
 	# resolve @LICENSE@ by text in header files
-	for HEADER in $(CURDIR)/debian/$(LIBNAME)-dev/usr/include/$(DEBPKGNAME)/*.h ; do \
+	for HEADER in $(CURDIR)/debian/$(LIBNAME)-dev/usr/include/$(DEB_SOURCE)/*.h ; do \
 	  if grep -q '@LICENSE@' $${HEADER} ; then \
 	    sed '/@LICENSE@/,$$d' $${HEADER} > $${HEADER}_tmp ; \
 	    sed 's/^/ * /' Licenses/gnu     >> $${HEADER}_tmp ; \