debian/changelog

-blasr (5.3+0-2) UNRELEASED; urgency=low
+blasr (5.3+0-2) unstable; urgency=low
+
+  * Team upload
 
   [ Steffen Moeller ]
   * debian/upstream/metadata: Added references to OMICtools and RRID
@@ -6,7 +8,17 @@ blasr (5.3+0-2) UNRELEASED; urgency=low
   [ Afif Elghraoui ]
   * Add README.source
 
- -- Afif Elghraoui <afif@debian.org>  Fri, 11 Aug 2017 16:33:50 -0400
+  [ Gilles Filippini ]
+  * Support for HDF5 1.10.1
+    Closes: #892630
+
+  [ Andreas Tille ]
+  * d/control:
+     - more cme-ish sequence of entries
+     - Standards-Version: 4.1.3
+  * debhelper 11
+
+ -- Andreas Tille <tille@debian.org>  Sun, 11 Mar 2018 18:02:22 +0100
 
 blasr (5.3+0-1) unstable; urgency=medium
 

debian/compat

-9
+11

debian/control

 Source: blasr
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif@debian.org>
+Section: science
+Priority: optional
 Build-Depends:
-	debhelper (>= 9),
+	debhelper (>= 11~),
 	python,
 	cmake,
 	libboost-dev,
@@ -12,10 +12,10 @@ Build-Depends:
 	zlib1g-dev,
 	libpbseq-dev (>= 0~20160912),
 	libpbbam-dev,
-Standards-Version: 3.9.8
-Homepage: https://github.com/PacificBiosciences/blasr
-Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git
+Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/blasr.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git
+Homepage: https://github.com/PacificBiosciences/blasr
 
 Package: blasr
 Architecture: any

debian/rules

@@ -20,11 +20,17 @@ export LIBPBDATA_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
 export LIBPBIHDF_INC=$(PBDATA_ROOT_DIR)/hdf
 export LIBPBIHDF_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)
 
+# Needed for HDF5 1.10.1 support
+HDF5_VERSION := $(shell grep 'HDF5 Version' $(HDF5_LIB)/libhdf5.settings | awk '{print $$3}')
+ifeq (yes,$(shell dpkg --compare-versions $(HDF5_VERSION) '>=' 1.10.1 && echo yes))
+export DEB_CXXFLAGS_MAINT_APPEND=-DHAVE_HDF5_1_10_1
+endif
+
 # CPPFLAGS apparently aren't exported for bam2bax/bax2bam
 export DEB_CXXFLAGS_MAINT_PREPEND = $(CPPFLAGS) -I$(PBDATA_ROOT_DIR)
 
 %:
-	dh $@ --parallel
+	dh $@
 
 override_dh_auto_configure:
 	./configure.py --shared