debian/changelog

+blasr (5.3.3+dfsg-4) unstable; urgency=medium
+
+  * Standards-Version: 4.5.0
+  * Versioned Build-Depends: libblasr-dev (>= 5.3.3+dfsg-2)
+    Closes: #949543
+
+ -- Andreas Tille <tille@debian.org>  Wed, 22 Jan 2020 17:48:33 +0100
+
 blasr (5.3.3+dfsg-3) unstable; urgency=medium
 
   * Build-Depends: s/python/python3/

debian/control

@@ -16,8 +16,8 @@ Build-Depends: debhelper-compat (= 12),
                libpbdata-dev,
                libpbcopper-dev,
                libgtest-dev,
-               libblasr-dev (>= 5.3.1+dfsg-2)
-Standards-Version: 4.4.1
+               libblasr-dev (>= 5.3.3+dfsg-2)
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/blasr
 Vcs-Git: https://salsa.debian.org/med-team/blasr.git
 Homepage: https://github.com/PacificBiosciences/blasr

debian/patches/use_debian_packaged_pblibs.patch

@@ -5,7 +5,7 @@ Description: Add some missing libraries to linker
 
 --- a/meson.build
 +++ b/meson.build
-@@ -51,15 +51,21 @@ blasr_thread_dep = dependency('threads',
+@@ -51,15 +51,19 @@ blasr_thread_dep = dependency('threads',
  blasr_boost_dep = dependency('boost', required : true)
  
  # pbbam
@@ -22,15 +22,13 @@ Description: Add some missing libraries to linker
  
 -blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_zlib_dep]
 +# missing libs for linker
-+samwriter_pbdata_deps = cpp.find_library('pbdata')
-+blasr_pbihdf_deps = cpp.find_library('pbihdf')
 +blasr_pbcopper_deps = cpp.find_library('pbcopper')
 +
-+blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_pbcopper_deps, blasr_zlib_dep, samwriter_pbdata_deps, blasr_pbihdf_deps]
++blasr_deps = [blasr_thread_dep, blasr_boost_dep, blasr_pbbam_dep, blasr_libblasr_dep, blasr_pbcopper_deps, blasr_zlib_dep]
  
  ########################
  # sources + executable #
-@@ -101,7 +107,7 @@ blasr_static_impl = static_library(
+@@ -101,7 +105,7 @@ blasr_static_impl = static_library(
    blasr_sources,
    install : false,
    dependencies : blasr_deps,
@@ -39,7 +37,7 @@ Description: Add some missing libraries to linker
  
  blasr_main = executable(
    'blasr', [
-@@ -111,7 +117,7 @@ blasr_main = executable(
+@@ -111,7 +115,7 @@ blasr_main = executable(
    install : true,
    dependencies : blasr_deps,
    link_with : blasr_static_impl,
@@ -48,7 +46,7 @@ Description: Add some missing libraries to linker
  
  blasr_utils_sawriter = executable(
    'sawriter', files([
-@@ -119,7 +125,7 @@ blasr_utils_sawriter = executable(
+@@ -119,7 +123,7 @@ blasr_utils_sawriter = executable(
    install : true,
    dependencies : blasr_deps,
    link_with : blasr_static_impl,
@@ -57,7 +55,7 @@ Description: Add some missing libraries to linker
  
  blasr_utils_toAfg = executable(
    'toAfg', files([
-@@ -127,7 +133,7 @@ blasr_utils_toAfg = executable(
+@@ -127,7 +131,7 @@ blasr_utils_toAfg = executable(
    install : false,
    dependencies : blasr_deps,
    link_with : blasr_static_impl,