debian/changelog

+bwa (0.7.17-2) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Secure URI in copyright format
+  * Fix wrong-path-for-interpreter
+
+ -- Andreas Tille <tille@debian.org>  Fri, 19 Oct 2018 15:05:09 +0200
+
 bwa (0.7.17-1) unstable; urgency=medium
 
   * debian/upstream/metadata: RRID -> SciCrunch

debian/compat

-10
+11

debian/control

@@ -7,11 +7,11 @@ Uploaders: Charles Plessy <plessy@debian.org>,
            Michael R. Crusoe <crusoe@ucdavis.edu>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                zlib1g-dev
-Standards-Version: 4.1.1
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/bwa.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/bwa.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/bwa
+Vcs-Git: https://salsa.debian.org/med-team/bwa.git
 Homepage: http://bio-bwa.sourceforge.net/
 
 Package: bwa

debian/copyright

-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Contact: Heng Li <lh3@sanger.ac.uk>,
                   https://lists.sourceforge.net/lists/listinfo/bio-bwa-help
 Upstream-Name: Burrows-Wheeler Aligner

debian/rules

@@ -18,3 +18,9 @@ override_dh_auto_build:
 
 override_dh_installchangelogs:
 	dh_installchangelogs NEWS.md
+
+override_dh_install:
+	dh_install
+	for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
+	    sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done