.gitlab/before.sh

@@ -64,6 +64,7 @@ echo "Log Directory............. $PROJECT_LOG_DIR" >> /tmp/report.txt
 echo "Branch.................... $CI_COMMIT_REF_NAME" >> /tmp/report.txt
 echo "CAMITK_CI_MODE............ $CAMITK_CI_MODE" >> /tmp/report.txt
 echo "CAMITK_CI_STAGE........... $CAMITK_CI_STAGE" >> /tmp/report.txt
+echo "CAMITK_PACKAGING.......... $CAMITK_PACKAGING" >> /tmp/report.txt
 
 # cleanup log directory
 if [ -d ${PROJECT_LOG_DIR} ] ; then 

.gitlab/gitlab-ci.yml

@@ -74,7 +74,7 @@ stages:
   - build
   - test
   - coverage
-
+  - package
 
 # -------------------------------------
 #          trigger config
@@ -93,16 +93,24 @@ stages:
     - triggers
     - schedules    
 
+.define_config: &skip_when_packaging
+  except:
+    variables:
+      # CAMITK_PACKAGING should be only set to TRUE in the pipeline schedule GUI
+      - $CAMITK_PACKAGING
+
 # -------------------------------------
 #    before script and tag
 # -------------------------------------
 
 .define_config: &default_job_config
+  # uncomment next line if you want ci scripts to only be triggered by specific api call
+  # <<: *triggered_by_api_call_and_schedules
+  # default CI jobs (apart from packaging) should run all the time, but not when packaging
+  <<: *skip_when_packaging
   before_script:
     # use Linux before script
     - .gitlab/before.sh
-  # uncomment next line if you want ci scripts to only be triggered by specific api call
-  # <<: *triggered_by_api_call_and_schedules
 
 # -------------------------------------
 #              scripts
@@ -373,3 +381,41 @@ win7_test:
   <<: *default_job_config
   <<: *test_artifacts
   <<: *test_script
+
+# -------------------------------------
+#         debian unstable jobs (for packaging)
+# -------------------------------------
+debian_unstable_packaging:
+  # Use the default image "debian:unstable" from docker.io 
+  # And then build everything from scratch
+  image: debian:sid
+  variables:
+    # OS Id
+    OS: "debian-unstable"
+    # the name of the current machine 
+    CDASH_SITE: "[Gitlab Runner] Debian unstable"
+    # compiler-arch-buildtype string
+    COMPILER_CONFIG: "GCC-64bits-Debug"
+    # path to the intended build directory
+    PROJECT_BUILD_DIR: "/opt/build/${OS}-${CI_COMMIT_REF_SLUG}"
+    # path to the intended log directory (cannot be an absolute path)
+    PROJECT_LOG_DIR: "${OS}-${CI_COMMIT_REF_SLUG}/log"
+  tags:
+    # packaging unstable image is on the debian:stable runner (debian stable host)
+    - debian:stable
+  stage: package
+  script:
+    # use the specific script
+    - .gitlab/package.sh
+  only:
+    variables:
+      # packaging only triggered by schedule, not commit/merge
+      # CAMITK_PACKAGING should be set to TRUE in the pipeline schedule GUI
+      - $CAMITK_PACKAGING == "TRUE"
+  artifacts:
+    paths:
+    - ${PROJECT_LOG_DIR}/check-environment.log
+    - ${PROJECT_LOG_DIR}/prepare-package-environment.log
+    - ${PROJECT_LOG_DIR}/build-package.log
+    when: always
+    expire_in: 31 days

.gitlab/package.sh

+#!/bin/bash
+
+# Uncomment next line to debug
+# set -x
+
+# cleanup apt state
+function cleanup-apt-pre() {
+    echo "## apt update"                > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq update                  > /dev/null
+    echo "## apt clean"                 > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq clean                   > /dev/null
+    echo "## apt upgrade"               > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq --assume-yes upgrade    > >(tee --append ${PACKAGE_LOG} | grep --line-buffered -e "^Get" -e "Setting up") 2>&1
+    echo "## apt update"                > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq update                  > >(tee --append ${PACKAGE_LOG} | grep --line-buffered -e "^Get" -e "Setting up") 2>&1
+    echo "## apt fix broken"            > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq --fix-broken install    > /dev/null
+}
+
+function cleanup-apt-post() {
+    echo "## apt autoremove" > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq --assume-yes autoremove > /dev/null
+    echo "## apt clean" > >(tee --append ${PACKAGE_LOG}) 2>&1
+    apt-get -qq clean  > /dev/null
+}
+
+if [ "$OS" == "win7" ]; then
+    # there is no docker on windows
+    CONTAINER_ID=0
+else
+    CONTAINER_ID=$(cat /proc/self/cgroup | head -n 1 | cut -d '/' -f3)
+fi
+
+# default stage is coverage
+if [[ "$CAMITK_CI_STAGE" == "" ]]; then 
+    CAMITK_CI_STAGE="$STAGE_PACKAGE";
+fi
+
+# default mode is Continuous for develop, Experimental for any other branches
+if [[ "$CAMITK_CI_MODE" == "" ]]; then 
+    if [[ "$CI_COMMIT_REF_NAME" == "develop" ]]; then 
+        CAMITK_CI_MODE="Continuous"; 
+    else 
+        CAMITK_CI_MODE="Experimental"; 
+    fi
+fi
+
+# cleanup log directory
+if [ -d ${PROJECT_LOG_DIR} ] ; then 
+    rm -rf ${PROJECT_LOG_DIR};
+fi
+mkdir -p ${PROJECT_LOG_DIR}
+
+# define log filenames
+CHECK_LOG=$(pwd)/${PROJECT_LOG_DIR}/check-environment.log
+PACKAGE_LOG=$(pwd)/${PROJECT_LOG_DIR}/prepare-package-environment.log
+BUILD_PACKAGE_LOG=$(pwd)/${PROJECT_LOG_DIR}/build-package.log
+
+# output all information to report file
+echo "Docker container id....... $CONTAINER_ID"         > ${CHECK_LOG}
+echo "Job....................... $CI_JOB_NAME"         >> ${CHECK_LOG}
+echo "Job id.................... $CI_JOB_ID"           >> ${CHECK_LOG}
+echo "Build Directory........... $PROJECT_BUILD_DIR"   >> ${CHECK_LOG}
+echo "Log Directory............. $PROJECT_LOG_DIR"     >> ${CHECK_LOG}
+echo "Branch.................... $CI_COMMIT_REF_NAME"  >> ${CHECK_LOG}
+echo "CAMITK_CI_MODE............ $CAMITK_CI_MODE"      >> ${CHECK_LOG}
+echo "CAMITK_CI_STAGE........... $CAMITK_CI_STAGE"     >> ${CHECK_LOG}
+
+# show report
+cat ${CHECK_LOG}
+
+echo "\n"                                         > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#################################"          > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#         Prepare image         #"          > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#################################\n"        > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "## id=$(id)"                                > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "## Working Directory=$(pwd)"                > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "## Modifying /etc/apt/sources.list"         > >(tee --append ${PACKAGE_LOG}) 2>&1
+sed -i "s/deb.debian.org/debian.univ-lorraine.fr/" /etc/apt/sources.list
+    
+# DEBIAN_FRONTEND=noninteractive is to prevent question asked on interactive shell (e.g. "Please select the layout matching the keyboard for this machine"
+export DEBIAN_FRONTEND=noninteractive
+    
+cleanup-apt-pre
+# apt install -y build-essential devscripts equivs fakeroot quilt dh-make automake libdistro-info-perl less vim piuparts git xpra net-tools cme libconfig-model-dpkg-perl libconfig-model-itself-perl devscripts cdbs git-buildpackage autopkgtest schroot gdb clang-tidy iwyu python-yaml doxygen lcov gcovr ccache wget > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "## apt install wget git-buildpackage lintian autopkgtest cme" > >(tee --append ${PACKAGE_LOG}) 2>&1
+apt-get -qq --assume-yes install wget git-buildpackage lintian autopkgtest cme > >(tee --append ${PACKAGE_LOG} | grep --line-buffered -e "^Get" -e "^Setting up") 2>&1
+cleanup-apt-post
+
+echo "## Create ~/.gbp.conf" > >(tee --append ${PACKAGE_LOG}) 2>&1
+cat > ~/.gbp.conf << 'EOF'
+[DEFAULT]
+# color everything
+color = auto
+pristine-tar-commit = True
+pristine-tar = True
+# Add a very verbose lintian after the build and normal lintian check
+postbuild = ~/.gbp-postbuild.sh
+# display information
+prebuild = echo "=========================" && echo "GBP_GIT_DIR=$GBP_GIT_DIR" && echo "GBP_BUILD_DIR=$GBP_BUILD_DIR" && echo "========================="
+EOF
+
+# echo "## ~/.gbp.conf" > >(tee --append ${PACKAGE_LOG}) 2>&1
+# cat ~/.gbp.conf > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Create ~/.gbp-postbuild.sh" > >(tee --append ${PACKAGE_LOG}) 2>&1
+cat > ~/.gbp-postbuild.sh << 'EOF'
+!/bin/bash
+# works when gbp exports for instance, the following variables
+# GBP_BUILD_DIR=/root/packaging/tmp/camitk-debian-ci
+# GBP_CHANGES_FILE=/root/packaging/tmp/camitk_4.2.201807251601-1_amd64.changes
+
+set -e
+
+# ---------------------- variables ----------------------
+echo "========================="
+NOW=$(date +%Y-%m-%d-%H:%M)
+echo "GBP_BUILD_DIR=$GBP_BUILD_DIR"
+echo "GBP_CHANGES_FILE=$GBP_CHANGES_FILE"
+echo "Changes files:"
+ls -la $GBP_CHANGES_FILE
+echo "All files:"
+ls -la
+
+# ---------------------- lintian ----------------------
+echo "=========================" 
+lintianHost=$(lintian --version)
+lintian -iIE --pedantic $GBP_CHANGES_FILE 2>&1 | tee ../lintian-$NOW-log.txt
+
+# ---------------------- autopkgtest ----------------------
+echo "========================="
+# we need to write a bash script in order to run autopkgtest inside the sid-dev docker
+autopkgtest -l ../autopkgtest-$NOW-log.txt $GBP_CHANGES_FILE -- null
+EOF
+
+# echo "## ~/.gbp-postbuild.sh" > >(tee --append ${PACKAGE_LOG}) 2>&1
+# cat ~/.gbp-postbuild.sh > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Make ~/.gbp-postbuild.sh executable" > >(tee --append ${PACKAGE_LOG}) 2>&1
+chmod a+x ~/.gbp-postbuild.sh
+ls -la ~ > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "\n"                                         > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#################################"          > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#      Prepare source code      #"          > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#################################\n"        > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Get current develop branch version" > >(tee --append ${PACKAGE_LOG}) 2>&1
+wget --quiet https://gricad-gitlab.univ-grenoble-alpes.fr/CamiTK/CamiTK/raw/develop/CamiTKVersion.cmake --output-document=/tmp/CamiTKVersion.cmake
+export VERSION_MAJOR=$(grep CAMITK_VERSION_MAJOR /tmp/CamiTKVersion.cmake | cut -f2 -d'"')
+export VERSION_MINOR=$(grep CAMITK_VERSION_MINOR /tmp/CamiTKVersion.cmake | cut -f2 -d'"')
+export VERSION_PATCH=$(grep CAMITK_VERSION_PATCH /tmp/CamiTKVersion.cmake | cut -f2 -d'"')
+export NEW_VERSION="$VERSION_MAJOR.$VERSION_MINOR.$(date +"%Y%m%d%H%M")"
+echo "→ Detected version: $NEW_VERSION" > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+# copy the clone to another workspace to work on
+echo "## Clone debian git"  > >(tee --append ${PACKAGE_LOG}) 2>&1
+gbp clone https://salsa.debian.org/med-team/camitk.git camitk-debian-ci  > >(tee --append ${PACKAGE_LOG}) 2>&1
+# ls -la camitk-debian-ci  > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Create local upstream-ci branches"                             > >(tee --append ${PACKAGE_LOG}) 2>&1
+cd camitk-debian-ci
+git pull                                                                > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout --track origin/upstream                                    > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout --track origin/upstream-ci/master                          > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout upstream                                                   > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout -b upstream-ci/upstream                                    > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout master                                                     > >(tee --append ${PACKAGE_LOG}) 2>&1
+git config --local user.email Emmanuel.Promayon@univ-grenoble-alpes.fr  > >(tee --append ${PACKAGE_LOG}) 2>&1
+git config --local user.name "Emmanuel Promayon"                        > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "## git status"                                                    > >(tee --append ${PACKAGE_LOG}) 2>&1
+git status                                                              > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Download the current develop version tarball"                  > >(tee --append ${PACKAGE_LOG}) 2>&1
+rm -f ../*.tar.bz2
+gbp import-orig \
+    --upstream-branch=upstream-ci/upstream \
+    --debian-branch=upstream-ci/master \
+    --no-pristine-tar \
+    --no-interactive \
+    --upstream-version=$NEW_VERSION \
+    https://gricad-gitlab.univ-grenoble-alpes.fr/CamiTK/CamiTK/-/archive/develop/CamiTK-develop.tar.bz2  > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Add a snapshot in history" > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout upstream-ci/master > >(tee --append ${PACKAGE_LOG}) 2>&1
+gbp dch --git-author --upstream-branch=upstream-ci/upstream --debian-branch=upstream-ci/master --new-version=$NEW_VERSION-1  > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "## debian/changelog (last entry)" > >(tee --append ${PACKAGE_LOG}) 2>&1
+sed -n '1,/^ --/ p' debian/changelog > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Install deps" > >(tee --append ${PACKAGE_LOG}) 2>&1
+cd ..
+cleanup-apt-pre
+#mk-build-deps -t "apt-get -qq --assume-yes --no-install-recommends -o Debug::pkgProblemResolver=yes" --install "camitk-debian-ci/debian/control"  > >(tee --append ${PACKAGE_LOG} | grep --line-buffered -e "Get:" -e "Setting up") 2>&1
+mk-build-deps -t "apt-get --assume-yes --no-install-recommends -o Debug::pkgProblemResolver=yes" --install "camitk-debian-ci/debian/control"  > >(tee --append ${PACKAGE_LOG} | grep --line-buffered -e "^Get" -e "^Setting up") 2>&1
+cleanup-apt-post
+
+echo "\n"                                         > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#################################"          > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "#      Test package build       #"          > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "#################################\n"        > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+cd camitk-debian-ci
+
+echo "## Test building the package (directly on docker image, without pbuilder)" > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+{ time gbp buildpackage --git-no-create-orig --git-ignore-new --git-upstream-branch=upstream-ci/upstream --git-debian-branch=upstream-ci/master ; } > >(tee --append ${BUILD_PACKAGE_LOG} | grep --line-buffered -e "^dpkg" -e "Built target" -e "Test \#" -e "^W:" -e "^P:" -e "^E:" -e "^I:" -e "^X:" -e "^=====" -e "^cepgenerator-test.sh" -e "^config-test.sh" -e "CMake.*Warning") 2>&1
+
+echo "\n"                                         > >(tee --append ${PACKAGE_LOG}) 2>&1
+echo "#################################"          > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "#      Debian files check       #"          > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "#################################\n"        > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+
+echo "## Checking out upstream-ci/master" > >(tee --append ${PACKAGE_LOG}) 2>&1
+git checkout upstream-ci/master
+
+echo "## Check using cme"                                  > >(tee --append ${PACKAGE_LOG}) 2>&1
+DEBIAN_FRONTEND=noninteractive cme check dpkg              > >(tee --append ${PACKAGE_LOG}) 2>&1
+DEBIAN_FRONTEND=noninteractive cme check dpkg-control      > >(tee --append ${PACKAGE_LOG}) 2>&1
+DEBIAN_FRONTEND=noninteractive cme check dpkg-copyright    > >(tee --append ${PACKAGE_LOG}) 2>&1
+
+echo "## Check current version of debian-policy" > >(tee --append ${PACKAGE_LOG}) 2>&1
+apt-get update
+apt-cache policy debian-policy > >(tee --append ${PACKAGE_LOG}) 2>&1
+DEB_POLICY_CURRENT=$(apt-cache policy debian-policy | grep "^     [0-9]" | sed -e "s/ [0-9]*$//g" | sed -e "s/\.[0.9]$//g" | xargs)
+DEB_POLICY_IN_USE=$(grep "Standards-Version" debian/control | cut -f2 -d" " | xargs)
+echo "Debian policy version: current=$DEB_POLICY_CURRENT used=$DEB_POLICY_IN_USE"
+if [ "$DEB_POLICY_CURRENT" == "$DEB_POLICY_IN_USE" ]; then
+    echo "→ Debian standards version OK!"
+else
+    echo "→ Please modify debian/control and update 'Standards-Version' field to $DEB_POLICY_CURRENT (instead of $DEB_POLICY_IN_USE)"
+fi
+
+echo "## Check current version of debhelper" > >(tee --append ${PACKAGE_LOG}) 2>&1
+apt-get update
+apt-cache policy debhelper > >(tee --append ${PACKAGE_LOG}) 2>&1
+DEBHELPER_CURRENT=$(apt-cache policy debhelper | grep -e "^     [0-9]" | cut -f1 -d"." | sed -e "s/\.[0.9]$//g" | xargs)
+DEBHELPER_CURRENT_FULL=$(apt-cache policy debhelper | grep -e "^     [0-9]" | sed -e "s/ [0-9]*$//g" | xargs)
+DEBHELPER_IN_USE=$(cat debian/compat | xargs)
+echo "Debian debhelper version: current=$DEBHELPER_CURRENT (full version is $DEBHELPER_CURRENT_FULL) used=$DEBHELPER_IN_USE"
+if [ "$DEBHELPER_CURRENT" == "$DEBHELPER_IN_USE" ]; then
+    echo "→ Debian debhelper version OK!"
+else
+    echo "→ Please modify debian/compat to $DEBHELPER_CURRENT (instead of $DEBHELPER_IN_USE)"
+fi
+
+# check package directory
+echo "## ls current dir"                > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+ls -la .                                > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "## ls .."                         > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+ls -la ..                               > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+LOG_DIR=$(dirname ${BUILD_PACKAGE_LOG})
+echo "## ls $LOG_DIR"                   > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+ls -la $LOG_DIR                         > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "## ls /builds/CamiTK/CamiTK"      > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+ls -la /builds/CamiTK/CamiTK            > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1 
+echo "## ls camitk-build"               > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+ls -la camitk-build                     > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+
+# echo "## check overrides"               > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+#cat debian/libcamitk4.lintian-overrides > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+# echo "## camitk-build/lib"              > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+# ls -la camitk-build/lib                 > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "## check overrides for libcamitkcore.so with with objdump"      > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+LIB_FILENAME=$(ls camitk-build/lib/libcamitkcore.so.$VERSION_MAJOR.$VERSION_MINOR.$VERSION_PATCH)
+echo "checking $LIB_FILENAME"
+objdump -p $LIB_FILENAME | sed -n -e's/^[[:space:]]*SONAME[[:space:]]*//p' | sed -r -e's/([0-9])\.so\./\1-/; s/\.so(\.|$)//; y/_/-/; s/(.*)/\L&/'                                   > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+echo "## check overrides for libmonitoring.so with with objdump "      > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+LIB_FILENAME=$(ls camitk-build/lib/libmonitoring.so.$VERSION_MAJOR.$VERSION_MINOR.$VERSION_PATCH)
+echo "checking $LIB_FILENAME"
+objdump -p $LIB_FILENAME | sed -n -e's/^[[:space:]]*SONAME[[:space:]]*//p' | sed -r -e's/([0-9])\.so\./\1-/; s/\.so(\.|$)//; y/_/-/; s/(.*)/\L&/'                                   > >(tee --append ${BUILD_PACKAGE_LOG}) 2>&1
+
+# Check for failure of the packaging process
+if [ -f /builds/CamiTK/CamiTK/camitk_$NEW_VERSION-1_amd64.changes ]; then
+    echo "Everything is OK, packages were build!"
+else
+    echo "No changes file in /builds/CamiTK/CamiTK"
+    echo "The package was not generated, please check the artifacts and fix the problem:"
+    echo "- check environment : https://gricad-gitlab.univ-grenoble-alpes.fr/CamiTK/CamiTK/-/jobs/$CI_JOB_ID/artifacts/raw/debian-unstable-feature-continuous-packaging/log/check-environment.log"
+    echo "- prepare package environment : https://gricad-gitlab.univ-grenoble-alpes.fr/CamiTK/CamiTK/-/jobs/$CI_JOB_ID/artifacts/raw/debian-unstable-feature-continuous-packaging/log/prepare-package-environment.log"
+    echo "- build package : https://gricad-gitlab.univ-grenoble-alpes.fr/CamiTK/CamiTK/-/jobs/$CI_JOB_ID/artifacts/raw/debian-unstable-feature-continuous-packaging/log/build-package.log"
+    exit 1
+fi

CamiTKVersion.cmake

 #Specific to SDK: control the version (major, minor, default patch and )
 set(CAMITK_VERSION_MAJOR "4")
-set(CAMITK_VERSION_MINOR "1")
-set(CAMITK_VERSION_NICKNAME "burgundy") # Red Burgundy Amaranth Rose Auburn Cardinal Carmine Cerise Coquelicot Bordeaux
-set(CAMITK_VERSION_PATCH "2") # patch version for packaging, change when appropriate
+set(CAMITK_VERSION_MINOR           "2")
+set(CAMITK_VERSION_NICKNAME        "Carmine") # Red Burgundy Carmine Amaranth Rose Auburn Cardinal Cerise Coquelicot Bordeaux
+set(CAMITK_VERSION_PATCH           "dev") # patch version for packaging, change when appropriate

debian/control

@@ -21,7 +21,7 @@ Build-Depends: debhelper (>= 11),
                xauth,
                doxygen,
                graphviz
-Standards-Version: 4.1.5
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/camitk
 Vcs-Git: https://salsa.debian.org/med-team/camitk.git
 Homepage: https://camitk.imag.fr/
@@ -45,8 +45,10 @@ Architecture: any
 Depends: libcamitk4 (= ${binary:Version}),
          ${misc:Depends},
          ${shlibs:Depends}
-Replaces: libcamitk3, libcamitk4 (<< 4.1.2)
-Breaks: libcamitk3, libcamitk4 (<< 4.1.2)
+Breaks: libcamitk3,
+        libcamitk4 (<< 4.1.2)
+Replaces: libcamitk3,
+          libcamitk4 (<< 4.1.2)
 Description: Computer Assisted Medical Intervention Tool Kit - config
  Helps researchers and clinicians to easily and rapidly collaborate in
  order to prototype CAMI applications, that feature medical images,
@@ -168,7 +170,7 @@ Package: libqtpropertybrowser-dev
 Architecture: any
 Section: libdevel
 Depends: libqtpropertybrowser4 (= ${binary:Version}),
-         ${misc:Depends},
+         ${misc:Depends}
 Breaks: libqtpropertybrowser3-dev
 Replaces: libqtpropertybrowser3-dev
 Description: Qt Property Browser Library - development

imaging/actions/itkfilters/AnisotropicDiffusion.cpp

@@ -149,7 +149,7 @@ vtkSmartPointer<vtkImageData> AnisotropicDiffusion::itkProcessGradientAnisotropi
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -246,7 +246,7 @@ vtkSmartPointer<vtkImageData> AnisotropicDiffusion::itkProcessCurvatureAnisotrop
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/CannyEdgeDetection.cpp

@@ -113,7 +113,7 @@ vtkSmartPointer<vtkImageData> CannyEdgeDetection::itkProcess(vtkSmartPointer<vtk
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/ConnectedComponents.cpp

@@ -93,7 +93,7 @@ vtkSmartPointer<vtkImageData> ConnectedComponents::itkProcess(vtkSmartPointer<vt
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/Derivative.cpp

@@ -125,7 +125,7 @@ vtkSmartPointer<vtkImageData> Derivative::itkProcess(vtkSmartPointer<vtkImageDat
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/GaussianFilter.cpp

@@ -137,7 +137,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> GaussianFilter::itkProcessStandardGaussian(vtkSmartPointer<vtkImageData> img) {
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/GradientMagnitude.cpp

@@ -81,7 +81,7 @@ vtkSmartPointer<vtkImageData> GradientMagnitude::itkProcess(vtkSmartPointer<vtkI
     vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.cpp

@@ -106,7 +106,7 @@ vtkSmartPointer<vtkImageData> GradientMagnitudeRecursiveGaussian::itkProcess(vtk
     vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/Laplacian.cpp

@@ -100,7 +100,7 @@ vtkSmartPointer<vtkImageData> Laplacian::itkProcess(vtkSmartPointer<vtkImageData
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/LaplacianRecursiveGaussian.cpp

@@ -106,7 +106,7 @@ vtkSmartPointer<vtkImageData> LaplacianRecursiveGaussian::itkProcess(vtkSmartPoi
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/LaplacianSharpening.cpp

@@ -84,7 +84,7 @@ vtkSmartPointer<vtkImageData> LaplacianSharpening::itkProcess(vtkSmartPointer<vt
     vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/MeanFilter.cpp

@@ -121,7 +121,7 @@ vtkSmartPointer<vtkImageData> MeanFilter::itkProcess(vtkSmartPointer<vtkImageDat
     vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/MedianFilter.cpp

@@ -123,7 +123,7 @@ vtkSmartPointer<vtkImageData> MedianFilter::itkProcess(vtkSmartPointer<vtkImageD
     vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/MorphologicalOperators.cpp

@@ -181,7 +181,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryErosionFilter(vtkSma
 
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -246,7 +246,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryDilationFilter(vtkSmartPointer<vtkImageData> img) {
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -311,7 +311,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryClosureFilter(vtkSmartPointer<vtkImageData> img) {
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -391,7 +391,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryOpeningFilter(vtkSma
 
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -472,7 +472,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelErosionFilter(vtkSmartPointer<vtkImageData> img) {
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -538,7 +538,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelDilationFilter(vtkSmartPointer<vtkImageData> img) {
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -601,7 +601,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelDilationFilter(vt
 template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelClosureFilter(vtkSmartPointer<vtkImageData> img) {
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;
@@ -679,7 +679,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
 vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelOpeningFilter(vtkSmartPointer<vtkImageData> img) {
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itkfilters/SobelEdgeDetection.cpp

@@ -90,7 +90,7 @@ vtkSmartPointer<vtkImageData> SobelEdgeDetection::itkProcess(vtkSmartPointer<vtk
     vtkSmartPointer<vtkImageData> resultImage;
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;

imaging/actions/itksegmentation/ManualThreshold.cpp

@@ -108,7 +108,7 @@ vtkSmartPointer<vtkImageData> ManualThreshold::itkProcess(vtkSmartPointer<vtkIma
     vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
 
     // --------------------- Filters declaration and creation ----------------------
-    // Define ITK input and output image types with respect to the instanciation
+    // Define ITK input and output image types with respect to the instantiation
     //    types of the tamplate.
     typedef itk::Image< InputPixelType,  dim > InputImageType;
     typedef itk::Image< OutputPixelType, dim > OutputImageType;