Commit 39d0e6d7 authored by Saira Hussain's avatar Saira Hussain 💬
Browse files

Final unit tests

parent 37401109

debian/tests/run-unit-tests

+4 −7
Original line number Diff line number Diff line
@@ -20,16 +20,13 @@ gunzip -r * 
set -x



# Create the index file for a multi-FASTA

cdbfasta 

cdbfasta ebola.fasta



# Pull records based on the index file

cdbyank



# Retrieve records from the database file

cdbyank -a ''

cdbyank -a "Cote_d'Ivoire_ebolavirus,_complete_genome" ebola.fasta.cidx



# Retrieve specific sequence ranges

cdbyank -a '' <right_coo> <left_coo>

cdbyank -a "Cote_d'Ivoire_ebolavirus,_complete_genome 32 112" -R ebola.fasta.cidx



# Test the compression

cdbfasta ebola.fasta -z ebola.cdbz