debian/changelog

+circlator (1.5.5-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+
+ -- Andreas Tille <tille@debian.org>  Mon, 03 Dec 2018 08:15:39 +0100
+
 circlator (1.5.5-1) unstable; urgency=medium
 
   * Team upload.

debian/compat

-10
+11

debian/control

 Source: circlator
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Uploaders: Afif Elghraoui <afif@debian.org>
-Build-Depends:
-	debhelper (>= 10),
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~),
                dh-python,
                python3-all,
                python3-setuptools,
                python3-openpyxl,
                python3-jdcal,
                fastaq (>= 3.12.1),
-	python3-pysam (>= 0.8.1),
-	python3-pymummer (>= 0.9.0),
+               python3-pysam,
+               python3-pymummer,
 # Test-Depends:
                python3-nose,
                spades,
                bwa (>= 0.7.12),
                prodigal,
                canu
-Standards-Version: 4.1.3
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/circlator
+Vcs-Git: https://salsa.debian.org/med-team/circlator.git
 Homepage: http://sanger-pathogens.github.io/circlator/
-Vcs-Git: https://anonscm.debian.org/git/debian-med/circlator.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/circlator.git
 
 Package: circlator
 Architecture: all
-Depends:
-	${misc:Depends},
+Depends: ${misc:Depends},
          ${python3:Depends},
          prodigal,
          bwa (>= 0.7.12),

debian/rules

@@ -9,4 +9,6 @@ export LC_ALL=C.UTF-8
 	dh $@ --with python3 --buildsystem=pybuild
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	PYTHONPATH=$(CURDIR) nosetests3 -v --where=circlator/tests
+endif