Loading tools/clustal2link/1/#README# 0 → 100644 +13 −0 Original line number Diff line number Diff line One of the Circos tools is clustal2link, which parses clustal alignments and generates Circos input files to draw the alignments and coverage. You'll find this tool in the Circos installation directory under # tools/clustal2link Let's quickly run it on the data and see what the image looks like. # #parse the alignment files # > ./run.sh # # > cd circos # > circos No newline at end of file tools/clustal2link/1/README 0 → 100644 +11 −0 Original line number Diff line number Diff line One of the Circos tools is clustal2link, which parses clustal alignments and generates Circos input files to draw the alignments and coverage. You'll find this tool in the Circos installation directory under # tools/clustal2link Let's quickly run it on the data and see what the image looks like. # > ./run.sh # > cd circos # > circos No newline at end of file tools/clustal2link/1/circos/highlight.celA.txt 0 → 100644 +47 −0 Original line number Diff line number Diff line hsa8K 581 589 hsa8K 603 609 hsa8K 659 663 hsa8K 781 787 hsa8K 811 813 hsa8K 1239 1242 hsa8K 1257 1258 hsa8K 1642 1644 hsa8K 1661 1663 hsa8K 1812 1813 hsa8K 1862 1871 hsa8K 1957 1960 hsa8K 2068 2071 hsa8K 2104 2105 hsa8K 2162 2165 hsa8K 2184 2193 hsa8K 2385 2387 hsa8K 2407 2411 hsa8K 2417 2421 hsa8K 2467 2472 hsa8K 2474 2477 hsa8K 2545 2551 hsa8K 2579 2583 hsa8K 2598 2601 hsa8K 2615 2619 hsa8K 2623 2627 hsa8K 2746 2749 hsa8K 2829 2833 hsa8K 2841 2841 hsa8K 2845 2848 hsa8K 2865 2884 hsa8K 2885 2891 hsa8K 2904 2913 hsa8K 2999 3000 hsa8K 3018 3025 hsa8K 3074 3076 hsa8K 3078 3078 hsa8K 3166 3176 hsa8K 3205 3207 hsa8K 3216 3219 hsa8K 3222 3223 hsa8K 3259 3261 hsa8K 3264 3267 hsa8K 3284 3294 hsa8K 3372 3375 hsa8K 3379 3382 hsa8K 3388 3392 tools/clustal2link/1/circos/highlight.dmeA.txt 0 → 100644 +71 −0 Original line number Diff line number Diff line hsa8K 566 597 hsa8K 603 643 hsa8K 651 687 hsa8K 717 724 hsa8K 774 787 hsa8K 811 815 hsa8K 977 994 hsa8K 997 1001 hsa8K 1009 1019 hsa8K 1034 1058 hsa8K 1184 1186 hsa8K 1188 1192 hsa8K 1200 1219 hsa8K 1221 1227 hsa8K 1239 1242 hsa8K 1257 1265 hsa8K 1296 1300 hsa8K 1327 1332 hsa8K 1341 1345 hsa8K 1439 1443 hsa8K 1523 1531 hsa8K 1566 1572 hsa8K 1573 1581 hsa8K 1608 1614 hsa8K 1641 1645 hsa8K 1661 1671 hsa8K 1718 1721 hsa8K 1727 1742 hsa8K 1752 1784 hsa8K 1810 1813 hsa8K 1862 1878 hsa8K 1952 1960 hsa8K 1961 1967 hsa8K 1973 1976 hsa8K 2068 2071 hsa8K 2104 2109 hsa8K 2162 2183 hsa8K 2184 2194 hsa8K 2211 2222 hsa8K 2306 2310 hsa8K 2311 2324 hsa8K 2368 2383 hsa8K 2384 2387 hsa8K 2407 2411 hsa8K 2417 2430 hsa8K 2432 2448 hsa8K 2456 2463 hsa8K 2466 2472 hsa8K 2474 2478 hsa8K 2495 2501 hsa8K 2537 2575 hsa8K 2576 2585 hsa8K 2598 2601 hsa8K 2615 2620 hsa8K 2623 2631 hsa8K 2717 2719 hsa8K 2740 2749 hsa8K 2829 2834 hsa8K 2836 2841 hsa8K 2845 2853 hsa8K 2861 2891 hsa8K 2904 2913 hsa8K 2999 3025 hsa8K 3074 3078 hsa8K 3166 3207 hsa8K 3216 3223 hsa8K 3259 3261 hsa8K 3264 3270 hsa8K 3278 3307 hsa8K 3372 3382 hsa8K 3388 3438 tools/clustal2link/1/circos/highlight.dreA.txt 0 → 100644 +78 −0 Original line number Diff line number Diff line hsa8K 717 724 hsa8K 776 779 hsa8K 782 784 hsa8K 811 814 hsa8K 977 979 hsa8K 981 984 hsa8K 1009 1018 hsa8K 1052 1054 hsa8K 1185 1186 hsa8K 1188 1189 hsa8K 1191 1191 hsa8K 1200 1204 hsa8K 1216 1219 hsa8K 1221 1225 hsa8K 1227 1227 hsa8K 1239 1242 hsa8K 1257 1262 hsa8K 1296 1300 hsa8K 1327 1330 hsa8K 1341 1344 hsa8K 1439 1440 hsa8K 1526 1531 hsa8K 1566 1572 hsa8K 1573 1574 hsa8K 1610 1613 hsa8K 1641 1644 hsa8K 1661 1669 hsa8K 1718 1721 hsa8K 1764 1765 hsa8K 1767 1769 hsa8K 1774 1781 hsa8K 1810 1812 hsa8K 1866 1871 hsa8K 1952 1960 hsa8K 1961 1967 hsa8K 1975 1976 hsa8K 2068 2071 hsa8K 2104 2105 hsa8K 2162 2164 hsa8K 2184 2193 hsa8K 2306 2309 hsa8K 2311 2313 hsa8K 2370 2383 hsa8K 2385 2387 hsa8K 2406 2411 hsa8K 2417 2425 hsa8K 2458 2463 hsa8K 2465 2469 hsa8K 2474 2478 hsa8K 2495 2495 hsa8K 2546 2558 hsa8K 2573 2573 hsa8K 2580 2583 hsa8K 2600 2601 hsa8K 2615 2619 hsa8K 2624 2629 hsa8K 2712 2712 hsa8K 2741 2749 hsa8K 2829 2832 hsa8K 2837 2841 hsa8K 2845 2851 hsa8K 2862 2863 hsa8K 2872 2878 hsa8K 2885 2889 hsa8K 2904 2910 hsa8K 3016 3024 hsa8K 3073 3079 hsa8K 3166 3178 hsa8K 3180 3182 hsa8K 3187 3188 hsa8K 3200 3207 hsa8K 3216 3221 hsa8K 3258 3261 hsa8K 3264 3271 hsa8K 3277 3283 hsa8K 3286 3290 hsa8K 3375 3381 hsa8K 3388 3389 Loading
tools/clustal2link/1/#README# 0 → 100644 +13 −0 Original line number Diff line number Diff line One of the Circos tools is clustal2link, which parses clustal alignments and generates Circos input files to draw the alignments and coverage. You'll find this tool in the Circos installation directory under # tools/clustal2link Let's quickly run it on the data and see what the image looks like. # #parse the alignment files # > ./run.sh # # > cd circos # > circos No newline at end of file
tools/clustal2link/1/README 0 → 100644 +11 −0 Original line number Diff line number Diff line One of the Circos tools is clustal2link, which parses clustal alignments and generates Circos input files to draw the alignments and coverage. You'll find this tool in the Circos installation directory under # tools/clustal2link Let's quickly run it on the data and see what the image looks like. # > ./run.sh # > cd circos # > circos No newline at end of file
tools/clustal2link/1/circos/highlight.celA.txt 0 → 100644 +47 −0 Original line number Diff line number Diff line hsa8K 581 589 hsa8K 603 609 hsa8K 659 663 hsa8K 781 787 hsa8K 811 813 hsa8K 1239 1242 hsa8K 1257 1258 hsa8K 1642 1644 hsa8K 1661 1663 hsa8K 1812 1813 hsa8K 1862 1871 hsa8K 1957 1960 hsa8K 2068 2071 hsa8K 2104 2105 hsa8K 2162 2165 hsa8K 2184 2193 hsa8K 2385 2387 hsa8K 2407 2411 hsa8K 2417 2421 hsa8K 2467 2472 hsa8K 2474 2477 hsa8K 2545 2551 hsa8K 2579 2583 hsa8K 2598 2601 hsa8K 2615 2619 hsa8K 2623 2627 hsa8K 2746 2749 hsa8K 2829 2833 hsa8K 2841 2841 hsa8K 2845 2848 hsa8K 2865 2884 hsa8K 2885 2891 hsa8K 2904 2913 hsa8K 2999 3000 hsa8K 3018 3025 hsa8K 3074 3076 hsa8K 3078 3078 hsa8K 3166 3176 hsa8K 3205 3207 hsa8K 3216 3219 hsa8K 3222 3223 hsa8K 3259 3261 hsa8K 3264 3267 hsa8K 3284 3294 hsa8K 3372 3375 hsa8K 3379 3382 hsa8K 3388 3392
tools/clustal2link/1/circos/highlight.dmeA.txt 0 → 100644 +71 −0 Original line number Diff line number Diff line hsa8K 566 597 hsa8K 603 643 hsa8K 651 687 hsa8K 717 724 hsa8K 774 787 hsa8K 811 815 hsa8K 977 994 hsa8K 997 1001 hsa8K 1009 1019 hsa8K 1034 1058 hsa8K 1184 1186 hsa8K 1188 1192 hsa8K 1200 1219 hsa8K 1221 1227 hsa8K 1239 1242 hsa8K 1257 1265 hsa8K 1296 1300 hsa8K 1327 1332 hsa8K 1341 1345 hsa8K 1439 1443 hsa8K 1523 1531 hsa8K 1566 1572 hsa8K 1573 1581 hsa8K 1608 1614 hsa8K 1641 1645 hsa8K 1661 1671 hsa8K 1718 1721 hsa8K 1727 1742 hsa8K 1752 1784 hsa8K 1810 1813 hsa8K 1862 1878 hsa8K 1952 1960 hsa8K 1961 1967 hsa8K 1973 1976 hsa8K 2068 2071 hsa8K 2104 2109 hsa8K 2162 2183 hsa8K 2184 2194 hsa8K 2211 2222 hsa8K 2306 2310 hsa8K 2311 2324 hsa8K 2368 2383 hsa8K 2384 2387 hsa8K 2407 2411 hsa8K 2417 2430 hsa8K 2432 2448 hsa8K 2456 2463 hsa8K 2466 2472 hsa8K 2474 2478 hsa8K 2495 2501 hsa8K 2537 2575 hsa8K 2576 2585 hsa8K 2598 2601 hsa8K 2615 2620 hsa8K 2623 2631 hsa8K 2717 2719 hsa8K 2740 2749 hsa8K 2829 2834 hsa8K 2836 2841 hsa8K 2845 2853 hsa8K 2861 2891 hsa8K 2904 2913 hsa8K 2999 3025 hsa8K 3074 3078 hsa8K 3166 3207 hsa8K 3216 3223 hsa8K 3259 3261 hsa8K 3264 3270 hsa8K 3278 3307 hsa8K 3372 3382 hsa8K 3388 3438
tools/clustal2link/1/circos/highlight.dreA.txt 0 → 100644 +78 −0 Original line number Diff line number Diff line hsa8K 717 724 hsa8K 776 779 hsa8K 782 784 hsa8K 811 814 hsa8K 977 979 hsa8K 981 984 hsa8K 1009 1018 hsa8K 1052 1054 hsa8K 1185 1186 hsa8K 1188 1189 hsa8K 1191 1191 hsa8K 1200 1204 hsa8K 1216 1219 hsa8K 1221 1225 hsa8K 1227 1227 hsa8K 1239 1242 hsa8K 1257 1262 hsa8K 1296 1300 hsa8K 1327 1330 hsa8K 1341 1344 hsa8K 1439 1440 hsa8K 1526 1531 hsa8K 1566 1572 hsa8K 1573 1574 hsa8K 1610 1613 hsa8K 1641 1644 hsa8K 1661 1669 hsa8K 1718 1721 hsa8K 1764 1765 hsa8K 1767 1769 hsa8K 1774 1781 hsa8K 1810 1812 hsa8K 1866 1871 hsa8K 1952 1960 hsa8K 1961 1967 hsa8K 1975 1976 hsa8K 2068 2071 hsa8K 2104 2105 hsa8K 2162 2164 hsa8K 2184 2193 hsa8K 2306 2309 hsa8K 2311 2313 hsa8K 2370 2383 hsa8K 2385 2387 hsa8K 2406 2411 hsa8K 2417 2425 hsa8K 2458 2463 hsa8K 2465 2469 hsa8K 2474 2478 hsa8K 2495 2495 hsa8K 2546 2558 hsa8K 2573 2573 hsa8K 2580 2583 hsa8K 2600 2601 hsa8K 2615 2619 hsa8K 2624 2629 hsa8K 2712 2712 hsa8K 2741 2749 hsa8K 2829 2832 hsa8K 2837 2841 hsa8K 2845 2851 hsa8K 2862 2863 hsa8K 2872 2878 hsa8K 2885 2889 hsa8K 2904 2910 hsa8K 3016 3024 hsa8K 3073 3079 hsa8K 3166 3178 hsa8K 3180 3182 hsa8K 3187 3188 hsa8K 3200 3207 hsa8K 3216 3221 hsa8K 3258 3261 hsa8K 3264 3271 hsa8K 3277 3283 hsa8K 3286 3290 hsa8K 3375 3381 hsa8K 3388 3389
