debian/changelog

-circos (0.69.6+dfsg-2) UNRELEASED; urgency=medium
+circos (0.69.6+dfsg-2) unstable; urgency=medium
 
-  * Team upload.
+  [ Dylan Aïssi ]
   * Add missing dependency: libsvg-perl.
   * Update VCS to salsa.
-  * Standards-Version: 4.1.4 (no changes needed).
 
- -- Dylan Aïssi <bob.dybian@gmail.com>  Fri, 18 May 2018 21:51:04 +0200
+  [ Andreas Tille ]
+  * debhelper 11
+  * Standards-Version: 4.2.1
+  * Fix Perl interpreter path
+
+ -- Andreas Tille <tille@debian.org>  Sun, 28 Oct 2018 07:38:39 +0100
 
 circos (0.69.6+dfsg-1) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -4,8 +4,8 @@ Uploaders: Olivier Sallou <osallou@debian.org>,
            Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.4
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.2.1
 Vcs-Browser: https://salsa.debian.org/med-team/circos
 Vcs-Git: https://salsa.debian.org/med-team/circos.git
 Homepage: http://circos.ca/

debian/patches/fix_reading_default_tracks.patch

-Author: Tamas Deak <deatomium@gmail.com>
-Last-Updated: 2016-02-19
-Description: Fix error when reading default tracks
-Bug: https://bugs.launchpad.net/ubuntu/+source/circos/+bug/1547519
-Forwarded: not-needed
-
---- a/etc/housekeeping.conf
-+++ b/etc/housekeeping.conf
-@@ -255,7 +255,7 @@
- data_out_of_range = trim,warn # 
- 
- # Track default directory
--track_defaults = etc/tracks
-+track_defaults = /etc/circos/tracks
- 
- # Use round brushes for elements with thickness greater than round_brush_min_thickness?
- round_brush_use           = yes

debian/rules

@@ -15,6 +15,9 @@ override_dh_install:
 	find debian/circos -type f | xargs sed -i 's/include etc/include \/usr\/share\/circos\/etc/g'
 	find debian/circos -type f | xargs sed -i 's/include fonts/include \/usr\/share\/circos\/fonts/g'
 	find debian/circos -type f | xargs sed -i 's/include tiles/include \/usr\/share\/circos\/tiles/g'
+	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/*` ; do \
+	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
+	done
 
 override_dh_installman:
 	pod2man bin/circos > $(CURDIR)/debian/circos/usr/share/man/man1/circos.1