add autopkgtest

Tests: run-unit-test

Depends: @

Restrictions: allow-stderr

set -e

pkg="clearcut"

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then

  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)

  # Double quote below to expand the temporary directory variable now versus

  # later is on purpose.

  # shellcheck disable=SC2064

  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM

fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

# Compute tree by supplying alignment of DNA sequences from a file

clearcut --alignment --DNA --in=alignment1.dist --out=treefile.tre

# Compute tree from matrix

clearcut --distance --in=symmetric.dist --out=symmtree.tre

echo "test pass"