debian/changelog

-clonalframe (1.2-8) UNRELEASED; urgency=medium
+clonalframe (1.2-8) unstable; urgency=medium
 
+  [ Adrian Bunk ]
+  * comment out erroneous unused code which breaks build with glibc 2.27
+    Closes: #891335
+
+  [ Andreas Tille ]
   * cme fix dpkg-copyright
+  * Standards-Version: 4.1.3
+  * debhelper 11
 
- -- Andreas Tille <tille@debian.org>  Wed, 28 Feb 2018 11:24:06 +0100
+ -- Andreas Tille <tille@debian.org>  Mon, 05 Mar 2018 17:15:32 +0100
 
 clonalframe (1.2-7) unstable; urgency=medium
 

debian/compat

-10
+11

debian/control

@@ -3,10 +3,10 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.
 Uploaders: Andreas Tille <tille@debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
                qt5-qmake,
                libgsl-dev
-Standards-Version: 4.1.0
+Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/clonalframe.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/clonalframe.git
 Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm

debian/patches/glibc2.27.patch

+Description: Comment out Util::lBinoProb()
+ The code didn't make sense, causes FTBFS with glibc >= 2.27 and was unused.
+Author: Adrian Bunk <bunk@debian.org>
+Bug-Debian: https://bugs.debian.org/891335
+
+--- clonalframe-1.2.orig/src/util.cpp
++++ clonalframe-1.2/src/util.cpp
+@@ -93,6 +93,7 @@ fclose(f);
+     }
+ 
+ 
++#if 0
+     double Util::lBinoProb (int i,int n, double p)
+             /*returns the prob of i successes in n trials with prob of sucess p.*/
+     {
+@@ -149,6 +150,7 @@ fclose(f);
+ 
+         return logsum;
+     }
++#endif  /* 0 */
+ 
+ 
+     double Util::lbetapdf(double x,double a,double b)
+--- clonalframe-1.2.orig/src/util.h
++++ clonalframe-1.2/src/util.h
+@@ -56,7 +56,7 @@ namespace wb {
+         static void normalize(gsl_vector * v);
+         static void normalize(double *v,int size);
+         static int  vecsum_char(gsl_vector_char * vec);
+-        static double lBinoProb (int i,int n, double p);
++        //static double lBinoProb (int i,int n, double p);
+         static double lbetapdf(double x,double a,double b);
+         static double mylgamma(double z);
+         static double LDirichletProb(double prior[],double post[],int length);

debian/patches/series

 01_gcc-4.6.patch
 no_qtlibs.patch
+glibc2.27.patch